%%% -*-BibTeX-*- %%% ==================================================================== %%% BibTeX-file{ %%% author = "Nelson H. F. Beebe", %%% version = "1.00", %%% date = "13 September 2018", %%% time = "08:15:32 MDT", %%% filename = "joss.bib", %%% address = "University of Utah %%% Department of Mathematics, 110 LCB %%% 155 S 1400 E RM 233 %%% Salt Lake City, UT 84112-0090 %%% USA", %%% telephone = "+1 801 581 5254", %%% FAX = "+1 801 581 4148", %%% URL = "https://www.math.utah.edu/~beebe", %%% checksum = "38104 9888 35663 395375", %%% email = "beebe at math.utah.edu, beebe at acm.org, %%% beebe at computer.org (Internet)", %%% codetable = "ISO/ASCII", %%% keywords = "bibliography; BibTeX; Journal of Open Source %%% Software", %%% license = "public domain", %%% supported = "yes", %%% docstring = "This is a COMPLETE bibliography of the %%% open-access Journal of Open Source Software %%% (CODEN none, ISSN 2475-9066) published by the %%% Open Source Initiative. Publication began %%% with volume 1, number 1, in May 2016, and %%% issue numbers increment across annual %%% volumes. Page data are supplied, but they %%% appear to be article numbers, rather than %%% proper page numbers. Articles are published %%% online as soon as they have been accepted. %%% %%% The journal has Web sites at %%% %%% http://www.theoj.org/ %%% http://joss.theoj.org/ %%% https://github.com/openjournals/joss-papers/ %%% %%% At version 1.01, the COMPLETE year coverage %%% looked like this: %%% %%% 2016 ( 57) 2017 ( 138) 2018 ( 172) %%% %%% Article: 367 %%% %%% Total entries: 367 %%% %%% Data for this bibliography have been derived %%% almost entirely from the *.crossref.xml files %%% available in a downloadable ZIP archive from %%% the github.com site above. %%% %%% Numerous errors in the sources noted above %%% have been corrected. Spelling has been %%% verified with the UNIX spell and GNU ispell %%% programs using the exception dictionary %%% stored in the companion file with extension %%% .sok. %%% %%% BibTeX citation tags are uniformly chosen %%% as name:year:abbrev, where name is the %%% family name of the first author or editor, %%% year is a 4-digit number, and abbrev is a %%% 3-letter condensation of important title %%% words. Citation tags were automatically %%% generated by software developed for the %%% BibNet Project. %%% %%% In this bibliography, entries are sorted in %%% publication order, using ``bibsort -byvolume''. %%% %%% The checksum field above contains a CRC-16 %%% checksum as the first value, followed by the %%% equivalent of the standard UNIX wc (word %%% count) utility output of lines, words, and %%% characters. This is produced by Robert %%% Solovay's checksum utility.", %%% } %%% ==================================================================== @Preamble{ "\hyphenation{ }" # "\ifx \undefined \booktitle \def \booktitle #1{{{\em #1}}} \fi" # "\ifx \undefined \circled \def \circled #1{(#1)} \fi" # "\ifx \undefined \pkg \def \pkg #1{{{\tt #1}}} \fi" # "\ifx \undefined \reg \def \reg {\circled{R}} \fi" } %%% ==================================================================== %%% Acknowledgement abbreviations: @String{ack-nhfb = "Nelson H. F. Beebe, University of Utah, Department of Mathematics, 110 LCB, 155 S 1400 E RM 233, Salt Lake City, UT 84112-0090, USA, Tel: +1 801 581 5254, FAX: +1 801 581 4148, e-mail: \path|beebe@math.utah.edu|, \path|beebe@acm.org|, \path|beebe@computer.org| (Internet), URL: \path|https://www.math.utah.edu/~beebe/|"} %%% ==================================================================== %%% Journal abbreviations: @String{j-J-OPEN-SOURCE-SOFT = "Journal of Open Source Software"} %%% ==================================================================== %%% Bibliography entries, sorted in publication order with ``bibsort %%% --byvolume'': @Article{Louppe:2016:PCL, author = "Gilles Louppe and Kyle Cranmer and Juan Pavez", title = "\pkg{carl}: a likelihood-free inference toolbox", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "1", pages = "11:1--11:1", month = may, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00011", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00011", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "11 May 2016", ORCID-numbers = "Gilles Louppe / 0000-0002-2082-3106; Kyle Cranmer / 0000-0002-5769-7094; Juan Pavez / 0000-0002-7205-0053", } @Article{VanderPlas:2016:PMC, author = "Jake VanderPlas", title = "\pkg{mst\_clustering}: Clustering via {Euclidean} Minimum Spanning Trees", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "1", pages = "12:1--12:1", month = may, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00012", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00012", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "16 May 2016", ORCID-numbers = "Jake VanderPlas / 0000-0002-9623-3401", } @Article{Harpole:2016:PRR, author = "Alice Harpole and Ian Hawke", title = "\pkg{R3D2}: {Relativistic Reactive Riemann problem solver for Deflagrations and Detonations}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "1", pages = "16:1--16:1", month = may, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00016", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00016", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 May 2016", ORCID-numbers = "Alice Harpole / 0000-0002-1530-781X; Ian Hawke / 0000-0003-4805-0309", } @Article{Zhang:2016:ASG, author = "Zhao Zhang and Daniel S. Katz and Andre Merzky and Matteo Turilli and Shantenu Jha and Yadu Nand", title = "Application Skeleton: Generating Synthetic Applications for Infrastructure Research", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "1", pages = "17:1--17:2", month = may, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00017", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00017", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "11 May 2016", ORCID-numbers = "Zhao Zhang / 0000-0001-5921-0035; Daniel S. Katz / 0000-0001-5934-7525; Andre Merzky / 0000-0002-7228-4327; Matteo Turilli / 0000-0003-0527-1435; Shantenu Jha / 0000-0002-5040-026X; Yadu Nand / 0000-0002-9162-6003", } @Article{Wakefield:2016:PXM, author = "Matthew J. Wakefield", title = "\pkg{Xenomapper}: Mapping reads in a mixed species context", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "1", pages = "18:1--18:1", month = may, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00018", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00018", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 May 2016", ORCID-numbers = "Matthew J. Wakefield / 0000-0001-6624-4698", } @Article{Hickey:2016:RMG, author = "Peter F. Hickey", title = "Representation and Manipulation of Genomic Tuples in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "1", pages = "20:1--20:1", month = may, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00020", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00020", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 May 2016", ORCID-numbers = "Peter F. Hickey / 0000-0002-8153-6258", } @Article{Tauber:2016:PPP, author = "J. K. Tauber", title = "\pkg{pyuca}: a {Python} implementation of the {Unicode Collation Algorithm}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "1", pages = "21:1--21:1", month = may, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00021", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib; https://www.math.utah.edu/pub/tex/bib/unicode.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00021", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "18 May 2016", ORCID-numbers = "J. K. Tauber / 0000-0001-6534-8866", } @Article{Balhoff:2016:PSS, author = "James P. Balhoff", title = "\pkg{Scowl}: a {Scala DSL} for programming with the {OWL API}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "1", pages = "23:1--23:1", month = may, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00023", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00023", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "31 May 2016", ORCID-numbers = "James P. Balhoff / 0000-0002-8688-6599", } @Article{Foreman-Mackey:2016:PCP, author = "Daniel Foreman-Mackey", title = "\pkg{corner.py}: Scatterplot matrices in {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "2", pages = "24:1--24:2", month = jun, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00024", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00024", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 June 2016", ORCID-numbers = "Daniel Foreman-Mackey / 0000-0002-9328-5652", } @Article{Sloan:2016:PGF, author = "Zachary Sloan and Danny Arends and Karl W. Broman and Arthur Centeno and Nicholas Furlotte and Harm Nijveen and Lei Yan and Xiang Zhou and Robert W. Williams and Pjotr Prins", title = "\pkg{GeneNetwork}: framework for web-based genetics", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "2", pages = "25:1--25:3", month = jun, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00025", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00025", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "17 June 2016", ORCID-numbers = "Zachary Sloan / 0000-0002-8099-1363; Danny Arends / 0000-0001-8738-0162; Karl W. Broman / 0000-0002-4914-6671; Arthur Centeno / 0000-0003-3142-2081; Nicholas Furlotte / 0000-0002-9096-6276; Harm Nijveen / 0000-0002-9167-4945; Lei Yan / 0000-0001-5259-3379; Xiang Zhou / 0000-0002-4331-7599; Robert W. Williams / 0000-0001-8924-4447; Pjotr Prins / 0000-0002-8021-9162", } @Article{Sanderson:2016:PAT, author = "Conrad Sanderson and Ryan Curtin", title = "\pkg{Armadillo}: a template-based {C++} library for linear algebra", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "2", pages = "26:1--26:2", month = jun, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00026", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00026", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "10 June 2016", ORCID-numbers = "Conrad Sanderson / 0000-0002-0049-4501; Ryan Curtin / 0000-0002-9903-8214", } @Article{Greenhill:2016:PPP, author = "Simon J. Greenhill", title = "\pkg{Phylogemetric}: A {Python} library for calculating phylogenetic network metrics", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "2", pages = "28:1--28:1", month = jun, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00028", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00028", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 June 2016", ORCID-numbers = "Simon J. Greenhill / 0000-0001-7832-6156", } @Article{Jacobs:2016:PGR, author = "Christian T. Jacobs and Alexandros Avdis", title = "\pkg{Git-RDM}: A research data management plugin for the {Git} version control system", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "2", pages = "29:1--29:2", month = jun, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00029", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00029", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "19 June 2016", ORCID-numbers = "Christian T. Jacobs / 0000-0002-0034-4650; Alexandros Avdis / 0000-0002-2695-3358", } @Article{Madan:2016:PPM, author = "Christopher R. Madan", title = "\pkg{Prism}: Multiple spline regression with regularization, dimensionality reduction, and feature selection", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "3", pages = "31:1--31:3", month = jul, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00031", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00031", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "01 July 2016", ORCID-numbers = "Christopher R. Madan / 0000-0003-3228-6501", } @Article{Madnani:2016:PRC, author = "Nitin Madnani and Anastassia Loukina", title = "\pkg{RSMTool}: collection of tools building and evaluating automated scoring models", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "3", pages = "33:1--33:1", month = jul, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00033", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00033", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 July 2016", ORCID-numbers = "Nitin Madnani / 0000-0001-9354-6851; Anastassia Loukina / 0000-0002-8213-3362", } @Article{Levy:2016:PGI, author = "Michael A. Levy", title = "\pkg{gwdegree}: Improving interpretation of geometrically-weighted degree estimates in exponential random graph models", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "3", pages = "36:1--36:1", month = jul, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00036", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00036", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "13 July 2016", ORCID-numbers = "Michael A. Levy / 0000-0002-4188-2527", } @Article{Silge:2016:PTT, author = "Julia Silge and David Robinson", title = "\pkg{tidytext}: Text Mining and Analysis Using Tidy Data Principles in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "3", pages = "37:1--37:3", month = jul, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00037", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00037", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "11 July 2016", ORCID-numbers = "Julia Silge / 0000-0002-3671-836X; David Robinson / 0000-0001-8466-088X", } @Article{Frost:2016:PGJ, author = "Simon D. W. Frost", title = "\pkg{Gillespie.jl}: Stochastic Simulation Algorithm in {Julia}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "3", pages = "42:1--42:1", month = jul, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00042", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00042", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "30 July 2016", ORCID-numbers = "Simon DW Frost / 0000-0002-5207-9879", } @Article{Cuckovic:2016:AVA, author = "Zoran Cuckovic", title = "Advanced viewshed analysis: a Quantum {GIS} plug-in for the analysis of visual landscapes", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "4", pages = "32:1--32:3", month = aug, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00032", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00032", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "09 August 2016", ORCID-numbers = "Zoran Cuckovic / 0000-0001-7626-4086", } @Article{Bogutzky:2016:PPS, author = "Simon Bogutzky and Jan Christoph Schrader and Nassrin Hajinejad and Barbara Gr{\"u}ter", title = "\pkg{PsychoPhysioCollector}: A Smartphone-Based Data Collection App for Psychophysiological Research", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "4", pages = "40:1--40:3", month = aug, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00040", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00040", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 August 2016", ORCID-numbers = "Simon Bogutzky / 0000-0002-9279-6549", } @Article{Cooper:2016:PPP, author = "Christopher D. Cooper and Natalia C. Clementi and Gilbert Forsyth and Lorena A. Barba", title = "\pkg{PyGBe}: {Python}, {GPUs} and Boundary elements for biomolecular electrostatics", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "4", pages = "43:1--43:1", month = aug, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00043", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00043", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "18 August 2016", ORCID-numbers = "Christopher D. Cooper / 0000-0003-0282-8998; Natalia C. Clementi / 0000-0002-0575-5520; Gilbert Forsyth / 0000-0002-4983-1978; Lorena A. Barba / 0000-0001-5812-2711", } @Article{Hinton:2016:PC, author = "Samuel Hinton", title = "\pkg{ChainConsumer}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "4", pages = "45:1--45:2", month = aug, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00045", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00045", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "30 August 2016", ORCID-numbers = "Samuel Hinton / 0000-0003-2071-9349", } @Article{Vitolo:2016:PRI, author = "Claudia Vitolo and Andrew Russell and Allan Tucker", title = "\pkg{rdefra}: Interact with the {UK AIR Pollution Database} from {DEFRA}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "4", pages = "51:1--51:2", month = aug, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00051", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00051", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 August 2016", ORCID-numbers = "Claudia Vitolo / 0000-0002-4252-1176; Andrew Russell / 0000-0001-7120-8499; Allan Tucker / 0000-0001-5105-3506", } @Article{Giraud:2016:PCC, author = "Timoth{\'e}e Giraud and Nicolas Lambert", title = "\pkg{cartography}: Create and Integrate Maps in your {R} Workflow", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "4", pages = "54:1--54:2", month = aug, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00054", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00054", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "30 August 2016", ORCID-numbers = "Timoth{\'e}e Giraud / 0000-0002-1932-3323", } @Article{Brown:2016:PSL, author = "C. Titus Brown and Luiz Irber", title = "\pkg{sourmash}: a library for {MinHash} sketching of {DNA}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "5", pages = "27:1--27:1", month = sep, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00027", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00027", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "14 September 2016", ORCID-numbers = "C. Titus Brown / 0000-0001-6001-2677; Luiz Irber / 0000-0003-4371-9659", } @Article{McGibbon:2016:POH, author = "Robert T. McGibbon and Carlos X. Hern{\'a}ndez and Matthew P. Harrigan and Steven Kearnes and Mohammad M. Sultan and Stanis{\l}aw Jastrzebski and Brooke E. Husic and Vijay S. Pande", title = "\pkg{Osprey}: Hyperparameter Optimization for Machine Learning", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "5", pages = "34:1--34:2", month = sep, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00034", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00034", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 September 2016", ORCID-numbers = "Carlos X. Hern{\'a}ndez / 0000-0002-8146-5904", } @Article{Bogutzky:2016:PPP, author = "Simon Bogutzky and Phillip Marsch and Lic{\'\i}nio Roque and Nassrin Hajinejad and Barbara Gr{\"u}ter", title = "\pkg{PsychoPhysioPipeline}: A Processing and Analysis Pipeline for Psychophysiological Research", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "5", pages = "41:1--41:3", month = sep, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00041", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00041", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "09 September 2016", ORCID-numbers = "Simon Bogutzky / 0000-0002-9279-6549", } @Article{Eddelbuettel:2016:PRR, author = "Dirk Eddelbuettel and Wush Wu", title = "\pkg{RcppCNPy}: Read-Write Support for {NumPy} Files in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "5", pages = "55:1--55:1", month = sep, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00055", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00055", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "25 September 2016", ORCID-numbers = "Dirk Eddelbuettel / 0000-0001-6419-907X; Wush Wu / 0000-0001-5180-0567", } @Article{Michaels:2016:PHR, author = "Jonathan A. Michaels and Hansj{\"o}rg Scherberger", title = "\pkg{hebbRNN}: A Reward-Modulated {Hebbian} Learning Rule for Recurrent Neural Networks", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "5", pages = "60:1--60:2", month = sep, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00060", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00060", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "23 September 2016", ORCID-numbers = "Jonathan A. Michaels / 0000-0002-5179-3181; Hansj{\"o}rg Scherberger / 0000-0001-6593-2800", } @Article{Attali:2016:PEA, author = "Dean Attali", title = "\pkg{ezknitr}: Avoid the Typical Working Directory Pain When Using `\pkg{knitr}'", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "5", pages = "75:1--75:1", month = sep, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00075", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00075", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 September 2016", ORCID-numbers = "Dean Attali / 0000-0002-5645-3493", } @Article{Constantine:2016:PPA, author = "Paul Constantine and Ryan Howard and Andrew Glaws and Zachary Grey and Paul Diaz and Leslie Fletcher", title = "\pkg{Python} Active-subspaces Utility Library", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "5", pages = "79:1--79:1", month = sep, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00079", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00079", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "29 September 2016", ORCID-numbers = "Paul Constantine / 0000-0003-3726-6307", } @Article{Makela:2016:PIL, author = "Eetu M{\"a}kel{\"a}", title = "\pkg{LAS}: an integrated language analysis tool for multiple languages", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "6", pages = "35:1--35:2", month = oct, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00035", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00035", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 October 2016", ORCID-numbers = "Eetu M{\"a}kel{\"a} / 0000-0002-8366-8414", } @Article{Bocquet:2016:PPB, author = "Sebastian Bocquet and Faustin W. Carter", title = "\pkg{pygtc}: beautiful parameter covariance plots (aka. Giant Triangle Confusograms)", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "6", pages = "46:1--46:3", month = oct, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00046", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00046", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 October 2016", ORCID-numbers = "Sebastian Bocquet / 0000-0002-4900-805X; Faustin W. Carter / 0000-0002-1236-3517", } @Article{Barbary:2016:PSS, author = "Kyle Barbary", title = "\pkg{SEP}: Source Extractor as a library", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "6", pages = "58:1--58:2", month = oct, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00058", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00058", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 October 2016", ORCID-numbers = "Kyle Barbary / 0000-0002-2532-3696", } @Article{Ganz:2016:PRW, author = "Carl Ganz", title = "\pkg{rintrojs}: A Wrapper for the \pkg{Intro.js} Library", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "6", pages = "63:1--63:1", month = oct, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00063", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00063", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "11 October 2016", ORCID-numbers = "Carl Ganz / 0000-0002-2973-3545", } @Article{Page:2016:PGP, author = "Andrew J. Page and Sascha Steinbiss and Ben Taylor and Torsten Seemann and Jacqueline A. Keane", title = "\pkg{GFF3toEMBL}: Preparing annotated assemblies for submission to {EMBL}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "6", pages = "80:1--80:1", month = oct, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00080", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00080", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "06 October 2016", ORCID-numbers = "Andrew J. Page / 0000-0001-6919-6062; Sascha Steinbiss / 0000-0002-2151-0574; Torsten Seemann / 0000-0001-6046-610X; Jacqueline A. Keane / 0000-0002-2021-1863", } @Article{Theodoropoulos:2016:PHT, author = "Christos Theodoropoulos and Nikolaos Skoulikidis and Anastasios Stamou", title = "\pkg{Habfuzz}: A tool to calculate the instream hydraulic habitat suitability using fuzzy logic and fuzzy {Bayesian} inference", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "6", pages = "82:1--82:2", month = oct, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00082", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00082", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 October 2016", ORCID-numbers = "Christos Theodoropoulos / 0000-0002-5395-0347", } @Article{Holtgrewe:2016:PVP, author = "Manuel Holtgrewe and Dieter Beule", title = "\pkg{VCFPy}: a {Python 3} library with good support for both reading and writing {VCF}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "6", pages = "85:1--85:1", month = oct, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00085", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00085", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "25 October 2016", ORCID-numbers = "Manuel Holtgrewe / 0000-0002-3051-1763; Dieter Beule / 0000-0002-3284-0632", } @Article{Arends:2016:CTL, author = "Danny Arends and Yang Li and Gudrun A. Brockmann and Ritsert C. Jansen and Robert W. Williams and Pjotr Prins", title = "Correlation Trait Loci {(CTL)} mapping: phenotype network inference subject to genotype", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "6", pages = "87:1--87:4", month = oct, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00087", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00087", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "30 October 2016", ORCID-numbers = "Danny Arends / 0000-0001-8738-0162; Yang Li / 0000-0003-4022-7341; Gudrun A. Brockmann / 0000-0002-4387-2947; Ritsert C. Jansen / 0000-0003-2977-9110; Robert W. Williams / 0000-0001-8924-4447; Pjotr Prins / 0000-0002-8021-9162", } @Article{Jones:2016:PEE, author = "Zachary M. Jones and Fridolin J. Linder", title = "\pkg{edarf}: {Exploratory Data Analysis using Random Forests}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "6", pages = "92:1--92:4", month = oct, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00092", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00092", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "23 October 2016", ORCID-numbers = "Zachary M. Jones / 0000-0002-7523-0471; Fridolin J. Linder / 0000-0002-0499-0676", } @Article{Germonprez:2016:PDS, author = "Matt Germonprez and Thomas Gurney and Sai Uday Shankar Korlimarla and Robin Gandhi", title = "\pkg{DoSOCS}: A System for \pkg{SPDX 2.0} Document Creation and Storage", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "7", pages = "38:1--38:1", month = nov, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00038", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00038", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 November 2016", ORCID-numbers = "Matt Germonprez / 0000-0003-2326-5901", } @Article{Hernandez:2016:PXP, author = "Guillermo Hern{\'a}ndez and Francisco Fern{\'a}ndez", title = "\pkg{xpecgen}: A program to calculate {X}-ray spectra generated in tungsten anodes", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "7", pages = "62:1--62:2", month = nov, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00062", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00062", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "09 November 2016", ORCID-numbers = "Guillermo Hern{\'a}ndez / 0000-0002-7481-5961; Francisco Fern{\'a}ndez / 0000-0002-3732-3415", } @Article{Boersch-Supan:2016:PRF, author = "Philipp H. Boersch-Supan", title = "\pkg{rucrdtw}: Fast time series subsequence search in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "7", pages = "100:1--100:2", month = nov, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00100", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00100", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 November 2016", ORCID-numbers = "Philipp H. Boersch-Supan / 0000-0001-6723-6833", } @Article{Hughes:2016:PPR, author = "Sean M. Hughes", title = "\pkg{plater}: Read, Tidy, and Display Data from Microtiter Plates", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "7", pages = "106:1--106:1", month = nov, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00106", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00106", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 November 2016", ORCID-numbers = "Sean M. Hughes / 0000-0002-9409-9405", } @Article{Warren:2016:PRP, author = "Rene L. Warren", title = "\pkg{RAILS} and \pkg{Cobbler}: Scaffolding and automated finishing of draft genomes using long {DNA} sequences", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "7", pages = "116:1--116:2", month = nov, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00116", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00116", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "17 November 2016", ORCID-numbers = "Rene L. Warren / 0000-0002-9890-2293", } @Article{Raab:2016:PEU, author = "Markus Raab", title = "\pkg{Elektra}: universal framework to access configuration parameters", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "8", pages = "44:1--44:2", month = dec, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00044", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00044", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "14 December 2016", ORCID-numbers = "Markus Raab / 0000-0002-1493-9065", } @Article{VanHorn:2016:PMY, author = "Nicholas M. {Van Horn} and Aaron Beveridge", title = "\pkg{MassMine}: Your Access To Data", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "8", pages = "50:1--50:1", month = dec, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00050", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00050", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "06 December 2016", ORCID-numbers = "Nicholas M. Van Horn / 0000-0002-0695-7765; Aaron Beveridge / 0000-0002-5156-3044", } @Article{Vitolo:2016:PFR, author = "Claudia Vitolo and Peter Wells and Martin Dobias and Wouter Buytaert", title = "\pkg{fuse}: An {R} package for ensemble Hydrological Modelling", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "8", pages = "52:1--52:2", month = dec, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00052", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00052", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 December 2016", ORCID-numbers = "Claudia Vitolo / 0000-0002-4252-1176; Wouter Buytaert / 0000-0001-6994-4454", } @Article{Honorato:2016:PCP, author = "Rodrigo V. Honorato", title = "\pkg{CAZy-parser} a way to extract information from the {Carbohydrate-Active enZYmes} Database", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "8", pages = "53:1--53:1", month = dec, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00053", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00053", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "14 December 2016", ORCID-numbers = "Rodrigo V. Honorato / 0000-0001-5267-3002", } @Article{Ponge:2016:EG, author = "Julien Ponge and Yannick Loiseau and Fr{\'e}d{\'e}ric {Le Mou{\"e}l} and Nicolas Stouls and Philippe Charri{\`e}re and Daniel Petisme and Sylvain Desgrais and Franck Verrot", title = "{Eclipse} {Golo}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "8", pages = "93:1--93:1", month = dec, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00093", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00093", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "01 December 2016", ORCID-numbers = "Julien Ponge / 0000-0003-3452-9183", } @Article{DeSimone:2016:PPP, author = "Kevin DeSimone and Ariel Rokem and Keith Schneider", title = "\pkg{popeye}: a population receptive field estimation tool", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "8", pages = "103:1--103:1", month = dec, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00103", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00103", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "01 December 2016", ORCID-numbers = "Kevin DeSimone / 0000-0003-4254-9408; Ariel Rokem / 0000-0003-0679-1985; Keith Schneider / 0000-0001-7120-3380", } @Article{Rampin:2016:PRR, author = "R{\'e}mi Rampin and Fernando Chirigati and Dennis Shasha and Juliana Freire and Vicky Steeves", title = "\pkg{ReproZip}: The Reproducibility Packer", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "8", pages = "107:1--107:3", month = dec, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00107", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00107", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "01 December 2016", ORCID-numbers = "R{\'e}mi Rampin / 0000-0002-0524-2282; Fernando Chirigati / 0000-0002-9566-5835; Dennis Shasha / 0000-0002-7036-3312; Juliana Freire / 0000-0003-3915-7075; Vicky Steeves / 0000-0003-4298-168X", } @Article{Wakefield:2016:PSI, author = "Matthew J. Wakefield", title = "\pkg{SurvivalVolume}: interactive volume threshold survival graphs", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "8", pages = "111:1--111:2", month = dec, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00111", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00111", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "14 December 2016", ORCID-numbers = "Matthew J. Wakefield / 0000-0001-6624-4698", } @Article{Page:2016:MST, author = "Andrew J. Page and Ben Taylor and Jacqueline A. Keane", title = "Multilocus sequence typing by blast from de novo assemblies against {PubMLST}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "8", pages = "118:1--118:2", month = dec, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00118", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00118", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 December 2016", ORCID-numbers = "Andrew J. Page / 0000-0001-6919-6062; Jacqueline A. Keane / 0000-0002-2021-1863", } @Article{Lee:2016:PFF, author = "Seward Lee", title = "\pkg{finreportr}: Financial Data from {U.S. Securities and Exchange Commission}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "8", pages = "119:1--119:1", month = dec, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00119", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00119", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 December 2016", ORCID-numbers = "Seward Lee / 0000-0001-5583-035X", } @Article{McFee:2016:PRE, author = "Brian McFee", title = "\pkg{resampy}: efficient sample rate conversion in {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "8", pages = "125:1--125:1", month = dec, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00125", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00125", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 December 2016", ORCID-numbers = "Brian McFee / 0000-0001-6261-9747", } @Article{Goldsmith:2016:PVC, author = "Jeff Goldsmith", title = "\pkg{vbvs.concurrent}: Fitting Methods for the Functional Linear Concurrent Model", journal = j-J-OPEN-SOURCE-SOFT, volume = "1", number = "8", pages = "141:1--141:1", month = dec, year = "2016", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00141", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00141", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 December 2016", ORCID-numbers = "Jeff Goldsmith / 0000-0002-6150-8997", } @Article{Vitolo:2017:PHH, author = "Claudia Vitolo", title = "\pkg{hddtools}: Hydrological Data Discovery Tools", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "9", pages = "56:1--56:2", month = jan, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00056", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00056", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 January 2017", ORCID-numbers = "Claudia Vitolo / 0000-0002-4252-1176", } @Article{Kearney:2017:PEM, author = "Kelly A. Kearney", title = "\pkg{ecopath\_matlab}: A {Matlab}-based implementation of the {Ecopath} food web algorithm", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "9", pages = "64:1--64:2", month = jan, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00064", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/matlab.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00064", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 January 2017", } @Article{Halterman:2017:PMF, author = "Andrew Halterman", title = "\pkg{Mordecai}: Full Text Geoparsing and Event Geocoding", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "9", pages = "91:1--91:1", month = jan, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00091", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00091", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 January 2017", ORCID-numbers = "Andrew Halterman / 0000-0001-9716-9555", } @Article{Herman:2017:PSO, author = "Jon Herman and Will Usher", title = "\pkg{SALib}: An open-source {Python} library for Sensitivity Analysis", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "9", pages = "97:1--97:2", month = jan, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00097", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00097", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "10 January 2017", ORCID-numbers = "Jon Herman / 0000-0002-4081-3175; Will Usher / 0000-0001-9367-1791", } @Article{Norris:2017:PPA, author = "Clayton Norris and Philip Schrodt and John Beieler", title = "\pkg{PETRARCH2}: Another Event Coding Program", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "9", pages = "133:1--133:1", month = jan, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00133", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00133", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "03 January 2017", ORCID-numbers = "Clayton Norris / 0000-0001-5907-757X; Philip Schrodt / 0000-0003-3495-4198; John Beieler / 0000-0001-7811-4399", } @Article{Naecker:2017:PPP, author = "Benjamin Naecker and Niru Maheswaranathan and Surya Ganguli and Stephen Baccus", title = "\pkg{Pyret}: A {Python} package for analysis of neurophysiology data", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "9", pages = "137:1--137:1", month = jan, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00137", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00137", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "06 January 2017", ORCID-numbers = "Benjamin Naecker / 0000-0002-7525-1635; Niru Maheswaranathan / 0000-0002-3946-4705", } @Article{Jensen:2017:POA, author = "Kristian Jensen and Joao G. R. Cardoso and Nikolaus Sonnenschein", title = "\pkg{Optlang}: An algebraic modeling language for mathematical optimization", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "9", pages = "139:1--139:1", month = jan, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00139", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00139", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "03 January 2017", ORCID-numbers = "Kristian Jensen / 0000-0002-2796-805X; Joao G. R. Cardoso / 0000-0001-8173-2673; Nikolaus Sonnenschein / 0000-0002-7581-4936", } @Article{Scott:2017:PSI, author = "Camille Scott", title = "\pkg{shmlast}: An improved implementation of Conditional Reciprocal Best Hits with {LAST} and {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "9", pages = "142:1--142:4", month = jan, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00142", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00142", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 January 2017", ORCID-numbers = "Camille Scott / 0000-0001-8822-8779", } @Article{Alexandre:2017:PLM, author = "Eduardo S. M. Alexandre", title = "\pkg{Limarka}: making possible {Brazilian} students writing dissertation and thesis with {Markdown}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "9", pages = "169:1--169:1", month = jan, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00169", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00169", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 January 2017", ORCID-numbers = "Eduardo S. M. Alexandre / 0000-0002-9165-9438", } @Article{Lang:2017:PBT, author = "Michel Lang and Bernd Bischl and Dirk Surmann", title = "\pkg{batchtools}: Tools for {R} to work on batch systems", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "10", pages = "135:1--135:2", month = feb, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00135", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00135", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 February 2017", ORCID-numbers = "Michel Lang / 0000-0001-9754-0393; Bernd Bischl / 0000-0001-6002-6980; Dirk Surmann / 0000-0003-0873-137X", } @Article{Hazelton:2017:PPI, author = "Bryna J. Hazelton and Daniel C. Jacobs and Jonathan C. Pober and Adam P. Beardsley", title = "\pkg{pyuvdata}: an interface for astronomical interferometeric datasets in python", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "10", pages = "140:1--140:1", month = feb, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00140", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00140", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 February 2017", ORCID-numbers = "Bryna J. Hazelton / 0000-0001-7532-645X; Daniel C. Jacobs / 0000-0002-0917-2269; Jonathan C. Pober / 0000-0002-3492-0433; Adam P. Beardsley / 0000-0001-9428-8233", } @Article{McCormick:2017:PSS, author = "Matthew M. McCormick and Mark L. Palmeri and Jean-Christophe Fillion-Robin and Stephen Aylward", title = "\pkg{SlicerITKUltrasound}: A {$3$D} Slicer extension for scan conversion of {B}-mode and next-generation ultrasound imaging modalities", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "10", pages = "153:1--153:1", month = feb, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00153", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00153", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "13 February 2017", ORCID-numbers = "Matthew M. McCormick / 0000-0001-9475-3756; Mark L. Palmeri / 0000-0001-8995-0050", } @Article{Ghoshal:2017:PFF, author = "Devarshi Ghoshal and Valerie Hendrix and William Fox and Sowmya Balasubhramanian and Lavanya Ramakrishnan", title = "\pkg{FRIEDA}: Flexible Robust Intelligent Elastic Data Management Framework", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "10", pages = "164:1--164:3", month = feb, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00164", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00164", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 February 2017", ORCID-numbers = "Devarshi Ghoshal / 0000-0002-6819-6949; Valerie Hendrix / 0000-0001-9061-8952; William Fox / 0000-0003-1751-5118; Sowmya Balasubhramanian / 0000-0003-1312-9092; Lavanya Ramakrishnan / 0000-0003-1761-4132", } @Article{Kortschak:2017:PBS, author = "R. Daniel Kortschak and Josh Bleecher Snyder and Manolis Maragkakis and David L. Adelson", title = "\pkg{b{\'\i}ogo}: a simple high-performance bioinformatics toolkit for the {Go} language", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "10", pages = "167:1--167:1", month = feb, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00167", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00167", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "18 February 2017", ORCID-numbers = "R Daniel Kortschak / 0000-0001-8295-2301; Josh Bleecher Snyder / 0000-0001-8327-7643; Manolis Maragkakis / 0000-0002-3158-1763; David L. Adelson / 0000-0003-2404-5636", } @Article{Kortschak:2017:PBH, author = "R. Daniel Kortschak and Brent S. Pedersen and David L. Adelson", title = "\pkg{b{\'\i}ogo/hts}: high throughput sequence handling for the {Go} language", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "10", pages = "168:1--168:1", month = feb, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00168", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00168", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 February 2017", ORCID-numbers = "R Daniel Kortschak / 0000-0001-8295-2301; Brent S. Pedersen / 0000-0003-1786-2216; David L. Adelson / 0000-0003-2404-5636", } @Article{Boehmke:2017:PKR, author = "Bradley C. Boehmke and Robert T. Montgomery and Jeffrey A. Ogden and Jason K. Freels", title = "\pkg{KraljicMatrix}: An {R} package for implementing the {Kraljic Matrix} to strategically analyze a firm's purchasing portfolio", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "10", pages = "170:1--170:2", month = feb, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00170", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00170", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 February 2017", ORCID-numbers = "Bradley C. Boehmke / 0000-0002-3611-8516", } @Article{Ardia:2017:PRC, author = "David Ardia and Kris Boudt and Jean-Philippe Gagnon-Fleury", title = "\pkg{RiskPortfolios}: Computation of Risk-Based Portfolios in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "10", pages = "171:1--171:1", month = feb, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00171", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00171", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "03 February 2017", ORCID-numbers = "David Ardia / 0000-0003-2823-782X", } @Article{Ardia:2017:PNC, author = "David Ardia and Keven Bluteau", title = "\pkg{nse}: Computation of Numerical Standard Errors in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "10", pages = "172:1--172:2", month = feb, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00172", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00172", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 February 2017", ORCID-numbers = "David Ardia / 0000-0003-2823-782X", } @Article{Caravaggi:2017:PRR, author = "Anthony Caravaggi", title = "\pkg{remBoot}: An {R} package for Random Encounter Modelling", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "10", pages = "176:1--176:3", month = feb, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00176", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00176", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 February 2017", ORCID-numbers = "Anthony Caravaggi / 0000-0002-1763-8970", } @Article{Sparks:2017:PGG, author = "Adam H. Sparks and Tomislav Hengl and Andrew Nelson", title = "\pkg{GSODR}: Global Summary Daily Weather Data in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "10", pages = "177:1--177:2", month = feb, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00177", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00177", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "03 February 2017", ORCID-numbers = "Adam H. Sparks / 0000-0002-0061-8359; Tomislav Hengl / 0000-0002-9921-5129; Andrew Nelson / 0000-0002-7249-3778", } @Article{Yao:2017:PWM, author = "Andy Yu Zhu Yao and David Kane", title = "\pkg{walkr}: {MCMC} Sampling from Non-Negative Convex Polytopes", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "11", pages = "61:1--61:1", month = mar, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00061", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00061", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 March 2017", ORCID-numbers = "Andy Yu Zhu Yao / 0000-0003-3898-8782", } @Article{Seshadri:2017:PEQ, author = "Pranay Seshadri and Geoffrey Parks", title = "\pkg{Effective-Quadratures (EQ)}: Polynomials for Computational Engineering Studies", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "11", pages = "166:1--166:2", month = mar, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00166", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00166", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "29 March 2017", ORCID-numbers = "Pranay Seshadri / 0000-0002-7351-012X; Geoffrey Parks / 0000-0001-8188-5047", } @Article{Niskanen:2017:PAT, author = "Julia Niskanen and Elina Salmela and Hannes Lohi", title = "\pkg{AncesTrim} --- a tool for trimming complex pedigrees", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "11", pages = "179:1--179:1", month = mar, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00179", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00179", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 March 2017", ORCID-numbers = "Julia Niskanen / 0000-0002-2871-6890; Elina Salmela / 0000-0003-1326-4462; Hannes Lohi / 0000-0003-1087-5532", } @Article{deVal-Borro:2017:PCL, author = "Miguel de Val-Borro and Martin A. Cordiner and Stefanie N. Milam and Steven B. Charnley", title = "\pkg{Cine}: Line excitation by infrared fluorescence in cometary atmospheres", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "11", pages = "182:1--182:2", month = mar, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00182", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00182", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 March 2017", ORCID-numbers = "Miguel de Val-Borro / 0000-0002-0455-9384; Martin A. Cordiner / 0000-0001-8233-2436; Stefanie N. Milam / 0000-0001-7694-4129", } @Article{Grieve:2017:PSE, author = "Stuart W. D. Grieve", title = "\pkg{spatial-efd}: A spatial-aware implementation of elliptical {Fourier} analysis", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "11", pages = "189:1--189:2", month = mar, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00189", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00189", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 March 2017", ORCID-numbers = "Stuart W. D. Grieve / 0000-0003-1893-7363", } @Article{Crabtree:2017:PPF, author = "Charles Crabtree and Michael J. Nelson", title = "\pkg{Plotrr}: Functions for making visual exploratory data analysis with nested data easier", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "11", pages = "190:1--190:2", month = mar, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00190", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00190", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 March 2017", ORCID-numbers = "Charles Crabtree / 0000-0001-5144-8671; Michael J. Nelson / 0000-0002-7665-7557", } @Article{Chamberlain:2017:PLR, author = "Scott Chamberlain and Jeffrey W. Hollister", title = "\pkg{lawn}: An {R} client for the {Turf Javascript Library for Geospatial Analysis}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "11", pages = "194:1--194:1", month = mar, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00194", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/java2010.bib; https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00194", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 March 2017", ORCID-numbers = "Scott Chamberlain / 0000-0003-1444-9135; Jeffrey W. Hollister / 0000-0002-9254-9740", } @Article{Pastell:2017:PWJ, author = "Matti Pastell", title = "\pkg{Weave.jl}: Scientific Reports Using {Julia}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "11", pages = "204:1--204:1", month = mar, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00204", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/litprog.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00204", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 March 2017", ORCID-numbers = "Matti Pastell / 0000-0002-5810-4801", } @Article{McInnes:2017:PHH, author = "Leland McInnes and John Healy and Steve Astels", title = "\pkg{hdbscan}: Hierarchical density based clustering", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "11", pages = "205:1--205:2", month = mar, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00205", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00205", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "21 March 2017", ORCID-numbers = "Leland McInnes / 0000-0003-2143-6834", } @Article{Higgins:2017:PVF, author = "Joshua Higgins and Violeta Holmes and Colin Venters", title = "\pkg{VCC}: A framework for building containerized reproducible cluster software environments", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "11", pages = "208:1--208:1", month = mar, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00208", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00208", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "18 March 2017", ORCID-numbers = "Joshua Higgins / 0000-0003-1551-5552; Violeta Holmes / 0000-0002-9786-4555", } @Article{Siu:2017:PRP, author = "Chapman Siu", title = "\pkg{Ramble}: Parser Combinator for {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "11", pages = "209:1--209:1", month = mar, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00209", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00209", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 March 2017", ORCID-numbers = "Chapman Siu / 0000-0002-2089-3796", } @Article{Carpi:2017:PEO, author = "Nicolas Carpi and Alexander Minges and Matthieu Piel", title = "\pkg{eLabFTW}: An open source laboratory notebook for research labs", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "12", pages = "146:1--146:1", month = apr, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00146", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00146", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "14 April 2017", ORCID-numbers = "Nicolas CARPi / 0000-0002-7494-5555; Alexander Minges / 0000-0001-7760-2753; Matthieu Piel / 0000-0002-2848-177X", } @Article{Hernandez:2017:PMD, author = "Carlos X. Hern{\'a}ndez and Matthew P. Harrigan and Mohammad M. Sultan and Vijay S. Pande", title = "\pkg{MSMExplorer}: Data Visualizations for Biomolecular Dynamics", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "12", pages = "188:1--188:2", month = apr, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00188", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00188", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 April 2017", ORCID-numbers = "Carlos X. Hern{\'a}ndez / 0000-0002-8146-5904; Matthew P. Harrigan / 0000-0001-9412-0553; Mohammad M. Sultan / 0000-0001-5578-6328", } @Article{Cortale:2017:PSE, author = "Nicholas Cortale and Dylan McNamara", title = "\pkg{skedm}: Empirical Dynamic Modeling", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "12", pages = "207:1--207:2", month = apr, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00207", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00207", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "19 April 2017", ORCID-numbers = "Nicholas Cortale / 0000-0003-2262-663X; Dylan McNamara / 0000-0001-8752-1586", } @Article{Boeing:2017:POP, author = "Geoff Boeing", title = "\pkg{OSMnx}: A {Python} package to work with graph-theoretic {OpenStreetMap} street networks", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "12", pages = "215:1--215:4", month = apr, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00215", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00215", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "24 April 2017", ORCID-numbers = "Geoff Boeing / 0000-0003-1851-6411", } @Article{Sparks:2017:PGU, author = "Adam H. Sparks", title = "\pkg{getCRUCLdata}: Use and Explore \pkg{CRU CL} v. 2.0 Climatology Elements in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "12", pages = "230:1--230:1", month = apr, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00230", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00230", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "06 April 2017", ORCID-numbers = "Adam H. Sparks / 0000-0002-0061-8359", } @Article{Mutel:2017:PBO, author = "Chris Mutel", title = "\pkg{Brightway}: An open source framework for Life Cycle Assessment", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "12", pages = "236:1--236:2", month = apr, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00236", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00236", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "19 April 2017", ORCID-numbers = "Chris Mutel / 0000-0002-7898-9862", } @Article{Willner:2017:PPP, author = "Sven N. Willner and Corinne Hartin and Robert Gieseke", title = "\pkg{pyhector}: A {Python} interface for the simple climate model {Hector}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "12", pages = "248:1--248:2", month = apr, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00248", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00248", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 April 2017", ORCID-numbers = "Sven N. Willner / 0000-0001-6798-6247; Corinne Hartin / 0000-0003-1834-6539; Robert Gieseke / 0000-0002-1236-5109", } @Article{Weisenburger:2017:PAA, author = "Kolby L. Weisenburger and Joseph Huehnerhoff and Emily M. Levesque and Philip Massey", title = "\pkg{acronym}: An Automatic Reduction Pipeline for Astronomical Images", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "102:1--102:2", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00102", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00102", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "02 May 2017", ORCID-numbers = "Kolby L. Weisenburger / 0000-0002-4639-1436", } @Article{Kamppi:2017:PKG, author = "Antti Kamppi and Esko Pekkarinen and Janne Virtanen and Joni-Matti M{\"a}{\"a}tt{\"a} and Juho J{\"a}rvinen and Lauri Matilainen and Mikko Teuho and Timo D. H{\"a}m{\"a}l{\"a}inen", title = "\pkg{Kactus2}: A graphical {EDA} tool built on the {IP-XACT} standard", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "151:1--151:1", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00151", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00151", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "02 May 2017", } @Article{Boehmke:2017:PLI, author = "Bradley C. Boehmke and Jason K. Freels", title = "\pkg{learningCurve}: An implementation of {Crawford}'s and {Wright}'s learning curve production functions", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "202:1--202:1", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00202", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00202", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "01 May 2017", ORCID-numbers = "Bradley C. Boehmke / 0000-0002-3611-8516", } @Article{Romano:2017:PY, author = "Luca Romano", title = "\pkg{YoungTab}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "221:1--221:1", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00221", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00221", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "09 May 2017", ORCID-numbers = "Luca Romano / 0000-0001-9033-1345", } @Article{Gerosa:2017:PFA, author = "Davide Gerosa and Michele Vallisneri", title = "\pkg{filltex}: Automatic queries to {ADS} and {INSPIRE} databases to fill {LaTex} bibliography", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "222:1--222:1", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00222", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00222", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "02 May 2017", ORCID-numbers = "Davide Gerosa / 0000-0002-0933-3579; Michele Vallisneri / 0000-0002-4162-0033", } @Article{Rognes:2017:PCA, author = "Marie E. Rognes and Patrick E. Farrell and Simon W. Funke and Johan E. Hake and Molly M. C. Maleckar", title = "\pkg{cbcbeat}: an adjoint-enabled framework for computational cardiac electrophysiology", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "224:1--224:1", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00224", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00224", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "31 May 2017", ORCID-numbers = "Marie E. Rognes / 0000-0002-6872-3710; Simon W. Funke / 0000-0003-4709-8415; Johan E. Hake / 0000-0002-4042-0128; Molly M. C. Maleckar / 0000-0002-7012-3853", } @Article{Tushar:2017:PFI, author = "Abhinav Tushar and Nicholas G. Reich", title = "\pkg{flusight}: interactive visualizations for infectious disease forecasts", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "231:1--231:2", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00231", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00231", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "10 May 2017", ORCID-numbers = "Abhinav Tushar / 0000-0001-7137-0728; Nicholas G. Reich / 0000-0003-3503-9899", } @Article{Murray:2017:PLC, author = "Kevin D. Murray and Justin O. Borevitz", title = "\pkg{libqcpp}: A {C++14} sequence quality control library", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "232:1--232:1", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00232", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00232", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "26 May 2017", ORCID-numbers = "Kevin D. Murray / 0000-0002-2466-1917; Justin O. Borevitz / 0000-0001-8408-3699", } @Article{Page:2017:PSF, author = "Andrew J. Page and Martin Hunt and Torsten Seemann and Jacqueline A. Keane", title = "\pkg{SaffronTree}: Fast, reference-free pseudo-phylogenomic trees from reads or contigs", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "243:1--243:2", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00243", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00243", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "03 May 2017", ORCID-numbers = "Andrew J. Page / 0000-0001-6919-6062; Martin Hunt / 0000-0002-8060-4335; Torsten Seemann / 0000-0001-6046-610X; Jacqueline A. Keane / 0000-0002-2021-1863", } @Article{Mutel:2017:PPG, author = "Chris Mutel", title = "\pkg{Pandarus}: {GIS} toolkit for regionalized life cycle assessment", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "244:1--244:1", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00244", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00244", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 May 2017", ORCID-numbers = "Chris Mutel / 0000-0002-7898-9862", } @Article{Morgan:2017:PLP, author = "Benjamin J. Morgan", title = "\pkg{lattice\_mc}: A {Python} Lattice-Gas {Monte Carlo} Module", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "247:1--247:2", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00247", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00247", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "26 May 2017", ORCID-numbers = "Benjamin J. Morgan / 0000-0002-3056-8233", } @Article{Hope:2017:PIM, author = "Gaute Hope", title = "\pkg{IBCAO\_py}: A matplotlib library for using the {International Bathymetric Chart of the Arctic Ocean} with cartopy and matplotlib", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "250:1--250:2", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00250", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00250", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 May 2017", ORCID-numbers = "Gaute Hope / 0000-0002-5653-1447", } @Article{Howard:2017:VBA, author = "James P. {Howard II}", title = "Virtual Bumblebees Artificial Life Simulation", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "256:1--256:1", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00256", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00256", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "11 May 2017", ORCID-numbers = "James P. Howard II / 0000-0003-4530-1547", } @Article{Mayer:2017:PNP, author = "Andreas Mayer", title = "\pkg{Noisyopt}: A {Python} library for optimizing noisy functions", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "258:1--258:1", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00258", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00258", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "30 May 2017", ORCID-numbers = "Andreas Mayer / 0000-0002-6643-7622", } @Article{Light:2017:PMS, author = "Roger A. Light", title = "\pkg{Mosquitto}: server and client implementation of the {MQTT} protocol", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "13", pages = "265:1--265:2", month = may, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00265", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00265", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "26 May 2017", ORCID-numbers = "Roger A. Light / 0000-0001-9218-7797", } @Article{Anderson:2017:PS, author = "Sean M. Anderson and Bernardo S. Mendoza", title = "\pkg{SHGYield}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "14", pages = "242:1--242:2", month = jun, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00242", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00242", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 June 2017", ORCID-numbers = "Sean M. Anderson / 0000-0002-4809-921X; Bernardo S. Mendoza / 0000-0002-8546-0262", } @Article{Didion:2017:PXE, author = "John P. Didion", title = "\pkg{xphyle}: Extraordinarily simple file handling", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "14", pages = "255:1--255:1", month = jun, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00255", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00255", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "18 June 2017", ORCID-numbers = "John P. Didion / 0000-0002-8111-6261", } @Article{Nolan:2017:PFR, author = "Rory Nolan and Sergi Padilla-Parra", title = "\pkg{filesstrings}: An {R} package for file and string manipulation", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "14", pages = "260:1--260:2", month = jun, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00260", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00260", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 June 2017", ORCID-numbers = "Rory Nolan / 0000-0002-5239-4043; Sergi Padilla-Parra / 0000-0002-8010-9481", } @Article{Raschka:2017:PBW, author = "Sebastian Raschka", title = "\pkg{BioPandas}: Working with molecular structures in \pkg{pandas} {DataFrames}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "14", pages = "279:1--279:1", month = jun, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00279", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00279", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 June 2017", ORCID-numbers = "Sebastian Raschka / 0000-0001-6989-4493", } @Article{Kleinberg:2017:WBT, author = "Bennett Kleinberg and Maximilian Mozes", title = "{Web}-based text anonymization with \pkg{Node.js}: Introducing {NETANOS (Named entity-based Text Anonymization for Open Science)}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "14", pages = "293:1--293:2", month = jun, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00293", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00293", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "25 June 2017", ORCID-numbers = "Bennett Kleinberg / 0000-0003-1658-9086; Maximilian Mozes / 0000-0001-8138-3792", } @Article{Arnold:2017:PKR, author = "Taylor B. Arnold", title = "\pkg{kerasR}: {R} Interface to the {Keras Deep Learning Library}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "14", pages = "296:1--296:1", month = jun, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00296", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00296", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 June 2017", ORCID-numbers = "Taylor B. Arnold / 0000-0003-0576-0669", } @Article{Padgham:2017:PO, author = "Mark Padgham and Robin Lovelace and Ma{\"e}lle Salmon and Bob Rudis", title = "\pkg{osmdata}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "14", pages = "305:1--305:1", month = jun, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00305", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00305", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "26 June 2017", } @Article{Moritz:2017:TDS, author = "Dominik Moritz", title = "Text detection in screen images with a Convolutional Neural Network", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "15", pages = "235:1--235:1", month = jul, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00235", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00235", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 July 2017", ORCID-numbers = "Dominik Moritz / 0000-0002-3110-1053", } @Article{Standage:2017:PKR, author = "Daniel Standage and Ali Aliyari and Lisa J. Cohen and Michael R. Crusoe and Tim Head and Luiz Irber and Shannon E. K. Joslin and N. B. Kingsley and Kevin D. Murray and Russell Neches and Camille Scott and Ryan Shean and Sascha Steinbiss and Cait Sydney and C. Titus Brown", title = "\pkg{khmer} release v2.1: software for biological sequence analysis", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "15", pages = "272:1--272:2", month = jul, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00272", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00272", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "03 July 2017", ORCID-numbers = "Daniel Standage / 0000-0003-0342-8531; Ali Aliyari / 0000-0003-0925-4886; Lisa J. Cohen / 0000-0002-3600-7218; Michael R. Crusoe / 0000-0002-2961-9670; Tim Head / 0000-0003-0931-3698; Luiz Irber / 0000-0003-4371-9659; Shannon E. K. Joslin / 0000-0001-5470-1193; N. B. Kingsley / 0000-0001-8574-8592; Kevin D. Murray / 0000-0002-2466-1917; Russell Neches / 0000-0002-2055-8381; Camille Scott / 0000-0001-8822-8779; Sascha Steinbiss / 0000-0002-2151-0574; C. Titus Brown / 0000-0001-6001-2677", } @Article{Bock:2017:POO, author = "Alexander Bock and Emil Axelsson and Karl Bladin and Jonathas Costa and Gene Payne and Matthew Territo and Joakim Kilby and Masha Kuznetsova and Carter Emmart and Anders Ynnerman", title = "\pkg{OpenSpace}: An open-source astrovisualization framework", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "15", pages = "281:1--281:1", month = jul, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00281", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00281", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "26 July 2017", ORCID-numbers = "Alexander Bock / 0000-0002-2849-6146; Emil Axelsson / 0000-0003-3482-6356; Karl Bladin / 0000-0001-7789-0142; Jonathas Costa / 0000-0002-5008-5685; Gene Payne / 0000-0001-8022-4781; Matthew Territo / 0000-0002-7085-1770; Masha Kuznetsova / 0000-0002-2474-5125; Anders Ynnerman / 0000-0002-9466-9826", } @Article{Constantinides:2017:PKI, author = "Bede Constantinides and David L. Robertson", title = "\pkg{Kindel}: indel-aware consensus for nucleotide sequence alignments", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "15", pages = "282:1--282:2", month = jul, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00282", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00282", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "13 July 2017", ORCID-numbers = "Bede Constantinides / 0000-0002-3480-3819; David L. Robertson / 0000-0001-6338-0221", } @Article{DeVecchi:2017:PCC, author = "Daniele {De Vecchi} and Fabio Dell'Acqua and Daniel Aurelio Galeazzo", title = "\pkg{CLOOPSy} --- {Copernicus Land cOver crOwdsourcing Platform for Sentinel-based mapping}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "15", pages = "291:1--291:2", month = jul, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00291", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00291", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "11 July 2017", ORCID-numbers = "Daniele De Vecchi / 0000-0001-8600-7657; Fabio Dell'Acqua / 0000-0002-0044-2998", } @Article{Hejazi:2017:PBT, author = "Nima S. Hejazi and Weixin Cai and Alan E. Hubbard", title = "\pkg{biotmle}: Targeted Learning for Biomarker Discovery", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "15", pages = "295:1--295:4", month = jul, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00295", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00295", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "26 July 2017", ORCID-numbers = "Nima S. Hejazi / 0000-0002-7127-2789; Weixin Cai / 0000-0003-2680-3066; Alan E. Hubbard / 0000-0002-3769-0127", } @Article{Krishnan:2017:PCG, author = "Anush Krishnan and Olivier Mesnard and Lorena A. Barba", title = "\pkg{cuIBM}: a {GPU}-based immersed boundary method code", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "15", pages = "301:1--301:1", month = jul, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00301", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00301", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "21 July 2017", ORCID-numbers = "Olivier Mesnard / 0000-0001-5335-7853; Lorena A. Barba / 0000-0001-5812-2711", } @Article{Harrison:2017:PVA, author = "Paul Francis Harrison", title = "\pkg{Varistran}: {Anscombe}'s variance stabilizing transformation for {RNA-seq} gene expression data", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "257:1--257:1", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00257", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00257", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 August 2017", ORCID-numbers = "Paul Francis Harrison / 0000-0002-3980-268X", } @Article{Hermes:2017:HBC, author = "Danny Hermes", title = "Helper for B{\'e}zier Curves, Triangles, and Higher Order Objects", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "267:1--267:3", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00267", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00267", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "02 August 2017", ORCID-numbers = "Danny Hermes / 0000-0001-7366-173X", } @Article{Chuang:2017:PAI, author = "Pi-Yueh Chuang and Lorena A. Barba", title = "\pkg{AmgXWrapper}: An interface between \pkg{PETSc} and the {NVIDIA} \pkg{AmgX} library", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "280:1--280:1", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00280", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00280", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "29 August 2017", ORCID-numbers = "Pi-Yueh Chuang / 0000-0001-6330-2709; Lorena A. Barba / 0000-0001-5812-2711", } @Article{Wilson:2017:PLS, author = "Lucas A. Wilson and John M. Fonner and Jason Allison and Oscar Esteban and Harry Kenya and Marshall Lerner", title = "\pkg{Launcher}: A simple tool for executing high throughput computing workloads", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "289:1--289:2", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00289", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00289", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "11 August 2017", ORCID-numbers = "Lucas A. Wilson / 0000-0002-0686-3152", } @Article{Dawe:2017:PRI, author = "Edmund Noel Dawe and Piti Ongmongkolkul and Giordon Stark", title = "\pkg{root\_numpy}: The interface between \pkg{ROOT} and \pkg{NumPy}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "307:1--307:2", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00307", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00307", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "13 August 2017", ORCID-numbers = "Edmund Noel Dawe / 0000-0003-0202-3284; Giordon Stark / 0000-0001-6616-3433", } @Article{vanHeeringen:2017:PGD, author = "Simon J. van Heeringen", title = "\pkg{genomepy}: download genomes the easy way", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "320:1--320:1", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00320", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00320", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 August 2017", ORCID-numbers = "Simon J. van Heeringen / 0000-0002-0411-3219", } @Article{Stadler:2017:CCP, author = "Konstantin Stadler", title = "The country converter \pkg{coco} --- a {Python} package for converting country names between different classification schemes", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "332:1--332:2", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00332", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00332", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "03 August 2017", ORCID-numbers = "Konstantin Stadler / 0000-0002-1548-201X", } @Article{Salmon:2017:PRR, author = "Ma{\"e}lle Salmon and Sreekanth Vakacherla and Carles Mil{\`a} and Julian D. Marshall and Cathryn Tonne", title = "\pkg{rtimicropem}: an {R} package supporting the analysis of {RTI MicroPEM} output files", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "333:1--333:1", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00333", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00333", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "02 August 2017", ORCID-numbers = "Ma{\"e}lle Salmon / 0000-0002-2815-0399; Sreekanth Vakacherla / 0000-0003-0400-6584; Carles Mil{\`a} / 0000-0003-0470-0760; Julian D. Marshall / 0000-0003-4087-1209; Cathryn Tonne / 0000-0003-3919-8264", } @Article{McLean:2017:PRI, author = "Mathew W. McLean", title = "\pkg{RefManageR}: Import and Manage {BibTeX} and {BibLaTeX} References in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "338:1--338:2", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00338", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00338", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 August 2017", ORCID-numbers = "Mathew W. McLean / 0000-0002-7891-9645", } @Article{Joyce:2017:PLI, author = "P. James Joyce", title = "\pkg{Lcopt} --- An interactive tool for creating fully parameterised Life Cycle Assessment {(LCA)} foreground models", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "339:1--339:1", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00339", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00339", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 August 2017", ORCID-numbers = "P James Joyce / 0000-0002-9560-3132", } @Article{Strozzi:2017:PPU, author = "Francesco Strozzi and Raoul Jean Pierre Bonnal", title = "\pkg{Pipengine}: an ultra light {YAML}-based pipeline execution engine", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "341:1--341:2", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00341", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00341", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "30 August 2017", ORCID-numbers = "Francesco Strozzi / 0000-0002-6845-6982; Raoul Jean Pierre Bonnal / 0000-0002-2123-6536", } @Article{Bazan:2017:PNR, author = "Juanjo Baz{\'a}n and Oscar Gonzalez-Recio", title = "\pkg{Nimbus}: a {Ruby} gem to implement Random Forest algorithms in a genomic selection context", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "351:1--351:3", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00351", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00351", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "18 August 2017", ORCID-numbers = "Juanjo Baz{\'a}n / 0000-0001-7699-3983; Oscar Gonzalez-Recio / 0000-0002-9106-4063", } @Article{Cokelaer:2017:PSSa, author = "Thomas Cokelaer and Dimitri Desvillechabrol and Rachel Legendre and M{\'e}lissa Cardon", title = "{'\pkg{Sequana}'}: a Set of {Snakemake NGS} pipelines", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "352:1--352:2", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00352", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00352", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "30 August 2017", ORCID-numbers = "Thomas Cokelaer / 0000-0001-6286-1138; Dimitri Desvillechabrol / 0000-0002-4947-7876; Rachel Legendre / 0000-0002-5196-9431; M{\'e}lissa Cardon / 0000-0001-9906-3236", } @Article{Ferraris:2017:PBM, author = "Sebastiano Ferraris and Dzhoshkun Ismail Shakir and Johannes {Van Der Merwe} and Willy Gsell and Jan Deprest and Tom Vercauteren", title = "\pkg{Bruker2nifti}: Magnetic Resonance Images converter from {Bruker} \pkg{ParaVision} to \pkg{Nifti} format", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "354:1--354:2", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00354", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00354", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 August 2017", ORCID-numbers = "Sebastiano Ferraris / 0000-0001-9279-4765; Dzhoshkun Ismail Shakir / 0000-0003-3009-4178; Johannes Van Der Merwe / 0000-0002-1381-4033; Willy Gsell / 0000-0001-7334-6107; Jan Deprest / 0000-0002-4920-945X; Tom Vercauteren / 0000-0003-1794-0456", } @Article{Tierney:2017:PVV, author = "Nicholas Tierney", title = "\pkg{visdat}: Visualising Whole Data Frames", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "355:1--355:2", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00355", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00355", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 August 2017", ORCID-numbers = "Nicholas Tierney / 0000-0003-1460-8722", } @Article{Schep:2017:PII, author = "Alicia N. Schep and Sarah K. Kummerfeld", title = "\pkg{iheatmapr}: Interactive complex heatmaps in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "359:1--359:1", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00359", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00359", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "14 August 2017", ORCID-numbers = "Alicia N. Schep / 0000-0002-3915-0618; Sarah K. Kummerfeld / 0000-0002-0089-2358", } @Article{Sommer:2017:PPI, author = "Philipp S. Sommer", title = "The \pkg{psyplot} interactive visualization framework", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "363:1--363:1", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00363", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00363", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 August 2017", ORCID-numbers = "Philipp S. Sommer / 0000-0001-6171-7716", } @Article{Hobson:2017:PDR, author = "Tanner C. Hobson and Mathieu Doucet and Ricardo M. Ferraz Leal", title = "\pkg{Django} Remote Submission", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "366:1--366:2", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00366", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00366", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 August 2017", ORCID-numbers = "Tanner C. Hobson / 0000-0002-6269-7881; Mathieu Doucet / 0000-0002-5560-6478; Ricardo M. Ferraz Leal / 0000-0002-9931-8304", } @Article{Morgan:2017:PBB, author = "Benjamin J. Morgan", title = "\pkg{bsym}: A basic symmetry module", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "16", pages = "370:1--370:2", month = aug, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00370", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00370", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "18 August 2017", ORCID-numbers = "Benjamin J. Morgan / 0000-0002-3056-8233", } @Article{Haghighi:2017:PPP, author = "Sepand Haghighi", title = "\pkg{Pyrgg}: {Python Random Graph Generator}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "17", pages = "331:1--331:2", month = sep, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00331", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00331", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 September 2017", ORCID-numbers = "Sepand Haghighi / 0000-0001-9450-2375", } @Article{Versypt:2017:PAO, author = "Ashlee N. Ford Versypt and Grace K. Harrell and Alexandra N. McPeak", title = "\pkg{ACEInhibPKPD}: An open-source {MATLAB} app for a pharmacokinetic\slash pharmacodynamic model of {ACE} inhibition", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "17", pages = "340:1--340:2", month = sep, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00340", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/matlab.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00340", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 September 2017", ORCID-numbers = "Ashlee N. Ford Versypt / 0000-0001-9059-5703", } @Article{Price-Whelan:2017:PSU, author = "Adrian M. Price-Whelan and Daniel Foreman-Mackey", title = "\pkg{schwimmbad}: A uniform interface to parallel processing pools in {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "17", pages = "357:1--357:2", month = sep, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00357", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00357", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 September 2017", ORCID-numbers = "Adrian M. Price-Whelan / 0000-0003-0872-7098; Daniel Foreman-Mackey / 0000-0002-9328-5652", } @Article{vanHulten:2017:PCC, author = "Marco van Hulten", title = "\pkg{ComPlot}: Comparison Plotter to visually evaluate ocean model simulations", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "17", pages = "368:1--368:4", month = sep, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00368", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00368", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "06 September 2017", ORCID-numbers = "Marco van Hulten / 0000-0002-3045-4949", } @Article{Binet:2017:PGH, author = "Sebastien Binet and Bastian Wieck and David Blyth and Emmanuel Busato and Micha{\"e}l Ughetto and Peter Waller", title = "\pkg{Go-HEP}: libraries for High Energy Physics analyses in {Go}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "17", pages = "372:1--372:4", month = sep, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00372", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00372", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 September 2017", ORCID-numbers = "Sebastien Binet / 0000-0003-4913-6104; Bastian Wieck / 0000-0001-6658-6807; David Blyth / 0000-0001-8452-516X; Emmanuel Busato / 0000-0003-2174-8512; Micha{\"e}l Ughetto / 0000-0002-3814-454X", } @Article{Latham:2017:PAM, author = "Shane J. Latham", title = "\pkg{array\_split}: Multi-dimensional array partitioning", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "17", pages = "373:1--373:2", month = sep, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00373", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00373", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 September 2017", ORCID-numbers = "Shane J. Latham / 0000-0001-8033-4665", } @Article{Bossek:2017:PMT, author = "Jakob Bossek", title = "\pkg{mcMST}: A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "17", pages = "374:1--374:2", month = sep, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00374", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00374", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 September 2017", ORCID-numbers = "Jakob Bossek / 0000-0002-4121-4668", } @Article{Raamana:2017:PPC, author = "Pradeep Reddy Raamana and Stephen C. Strother", title = "\pkg{Python} class defining a machine learning dataset ensuring key-based correspondence and maintaining integrity", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "17", pages = "382:1--382:1", month = sep, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00382", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00382", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "11 September 2017", ORCID-numbers = "Pradeep Reddy Raamana / 0000-0003-4662-0558; Stephen C. Strother / 0000-0002-3198-217X", } @Article{Margolis:2017:PSP, author = "Benjamin W. L. Margolis", title = "\pkg{SimuPy}: A {Python} framework for modeling and simulating dynamical systems", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "17", pages = "396:1--396:1", month = sep, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00396", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00396", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 September 2017", ORCID-numbers = "Benjamin W. L. Margolis / 0000-0001-5602-1888", } @Article{Kessler:2017:PEL, author = "Travis Kessler and John Hunter Mack", title = "\pkg{ECNet}: Large scale machine learning projects for fuel property prediction", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "17", pages = "401:1--401:2", month = sep, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00401", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00401", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "21 September 2017", ORCID-numbers = "Travis Kessler / 0000-0002-7363-4050", } @Article{Kane:2017:PBR, author = "Michael Kane", title = "\pkg{bittrex}: An {R} client for the {Bittrex Crypto-Currency Exchange}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "17", pages = "402:1--402:1", month = sep, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00402", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00402", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 September 2017", ORCID-numbers = "Michael Kane / 0000-0003-1899-6662", } @Article{Sparks:2017:PBF, author = "Adam H. Sparks and Mark Padgham and Hugh Parsonage and Keith Pembleton", title = "\pkg{bomrang}: Fetch {Australian Government Bureau of Meteorology} Data in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "17", pages = "411:1--411:2", month = sep, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00411", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00411", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "21 September 2017", ORCID-numbers = "Adam H. Sparks / 0000-0002-0061-8359; Mark Padgham / 0000-0003-2172-5265; Hugh Parsonage / 0000-0003-4055-0835; Keith Pembleton / 0000-0002-1896-4516", } @Article{Kortschak:2017:PBN, author = "R. Daniel Kortschak and David L. Adelson", title = "\pkg{b{\'\i}ogo/ncbi}: interfaces to {NCBI} services for the {Go} language", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "234:1--234:2", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00234", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00234", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "25 October 2017", ORCID-numbers = "R Daniel Kortschak / 0000-0001-8295-2301; David L. Adelson / 0000-0003-2404-5636", } @Article{Cardenas:2017:PGM, author = "Offray Vladimir Luna C{\'a}rdenas", title = "\pkg{Grafoscopio}: A moldable tool for literate computing and reproducible research", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "251:1--251:2", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00251", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00251", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 October 2017", ORCID-numbers = "Offray Vladimir Luna C{\'a}rdenas / 0000-0002-4640-6984", } @Article{Cokelaer:2017:PSSb, author = "Thomas Cokelaer and Juergen Hasch", title = "\pkg{'Spectrum'}: Spectral Analysis in {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "348:1--348:2", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00348", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00348", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 October 2017", ORCID-numbers = "Thomas Cokelaer / 0000-0001-6286-1138; Juergen Hasch / 0000-0002-9457-1220", } @Article{Wojdyr:2017:PUW, author = "Marcin Wojdyr", title = "\pkg{UglyMol}: a {WebGL} macromolecular viewer focused on the electron density", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "350:1--350:2", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00350", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00350", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 October 2017", ORCID-numbers = "Marcin Wojdyr / 0000-0003-3980-4092", } @Article{Sanderson:2017:PGP, author = "Conrad Sanderson and Ryan Curtin", title = "\pkg{gmm\_diag} and \pkg{gmm\_full}: {C++} classes for multi-threaded {Gaussian} mixture models and Expectation-Maximisation", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "365:1--365:2", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00365", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/multithreading.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00365", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "16 October 2017", ORCID-numbers = "Conrad Sanderson / 0000-0002-0049-4501; Ryan Curtin / 0000-0002-9903-8214", } @Article{Rovigatti:2017:PFE, author = "Gabriele Rovigatti", title = "Production Function Estimation in {R}: The \pkg{prodest} Package", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "371:1--371:1", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00371", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00371", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "09 October 2017", ORCID-numbers = "Gabriele Rovigatti / 0000-0003-4021-3070", } @Article{Mahar:2017:PHP, author = "Sara Mahar and Matthew Bellis", title = "\pkg{hmis}: A python tool to visualize and analyze {HMIS} data", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "384:1--384:2", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00384", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00384", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 October 2017", ORCID-numbers = "Sara Mahar / 0000-0003-0920-3042; Matthew Bellis / 0000-0002-6353-6043", } @Article{Price-Whelan:2017:PGP, author = "Adrian M. Price-Whelan", title = "\pkg{Gala}: A {Python} package for galactic dynamics", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "388:1--388:2", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00388", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00388", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 October 2017", ORCID-numbers = "Adrian M. Price-Whelan / 0000-0003-0872-7098", } @Article{Lauwens:2017:PRC, author = "Ben Lauwens", title = "\pkg{ResumableFunctions}: {C\#} sharp style generators for {Julia}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "400:1--400:2", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00400", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/csharp.bib; https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00400", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "31 October 2017", ORCID-numbers = "Ben Lauwens / 0000-0003-0761-6265", } @Article{Stegmaier:2017:PGR, author = "Philip Stegmaier and Alexander Kel and Edgar Wingender", title = "\pkg{geneXplainR}: An {R} interface for the {geneXplain} platform", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "412:1--412:3", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00412", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00412", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "17 October 2017", ORCID-numbers = "Philip Stegmaier / 0000-0002-1881-8746", } @Article{Folsom:2017:PHC, author = "Tim Folsom and V. P. Nagraj", title = "\pkg{hei}: Calculate Healthy Eating Index {(HEI)} Scores", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "417:1--417:1", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00417", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00417", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 October 2017", ORCID-numbers = "Tim Folsom / 0000-0002-8647-5810; V. P. Nagraj / 0000-0003-0060-566X", } @Article{Batut:2017:PEP, author = "B{\'e}r{\'e}nice Batut and Bj{\"o}rn Gr{\"u}ning", title = "\pkg{ENASearch}: A {Python} library for interacting with {ENA}'s {API}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "418:1--418:1", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00418", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00418", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "25 October 2017", ORCID-numbers = "B{\'e}r{\'e}nice Batut / 0000-0001-9852-1987; Bj{\"o}rn Gr{\"u}ning / 0000-0002-3079-6586", } @Article{Heusser:2017:PQP, author = "Andrew C. Heusser and Paxton C. Fitzpatrick and Campbell E. Field and Kirsten Ziman and Jeremy R. Manning", title = "\pkg{Quail}: A {Python} toolbox for analyzing and plotting free recall data", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "424:1--424:2", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00424", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00424", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "06 October 2017", ORCID-numbers = "Andrew C. Heusser / 0000-0001-6353-688X; Paxton C. Fitzpatrick / 0000-0003-0205-3088; Campbell E. Field / 0000-0001-7260-635X; Kirsten Ziman / 0000-0002-8942-3362; Jeremy R. Manning / 0000-0001-7613-4732", } @Article{Sochat:2017:SRO, author = "Vanessa Sochat", title = "Singularity Registry: Open Source Registry for Singularity Images", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "18", pages = "426:1--426:3", month = oct, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00426", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00426", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "16 October 2017", ORCID-numbers = "Vanessa Sochat / 0000-0002-4387-3819", } @Article{Polimis:2017:CIR, author = "Kivan Polimis and Ariel Rokem and Bryna Hazelton", title = "Confidence Intervals for Random Forests in {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "124:1--124:4", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00124", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00124", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "09 November 2017", ORCID-numbers = "Kivan Polimis / 0000-0002-3498-0479; Ariel Rokem / 0000-0003-0679-1985; Bryna Hazelton / 0000-0001-7532-645X", } @Article{Makowski:2017:PNP, author = "Dominique Makowski and L{\'e}o Dutriaux", title = "\pkg{Neuropsydia.py}: A {Python} Module for Creating Experiments, Tasks and Questionnaires", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "259:1--259:2", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00259", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00259", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 November 2017", ORCID-numbers = "Dominique Makowski / 0000-0001-5375-9967; L{\'e}o Dutriaux / 0000-0001-6304-8691", } @Article{Clementi:2017:PPL, author = "Natalia C. Clementi and Gilbert Forsyth and Christopher D. Cooper and Lorena A. Barba", title = "\pkg{PyGBe-LSPR}: {Python} and {GPU} Boundary-integral solver for electrostatics", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "306:1--306:2", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00306", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00306", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "30 November 2017", ORCID-numbers = "Natalia C. Clementi / 0000-0002-0575-5520; Gilbert Forsyth / 0000-0002-4983-1978; Christopher D. Cooper / 0000-0003-0282-8998; Lorena A. Barba / 0000-0001-5812-2711", } @Article{Raamana:2017:HWN, author = "Pradeep Reddy Raamana and Stephen C. Strother", title = "Histogram-weighted Networks for Feature Extraction, Connectivity and Advanced Analysis in Neuroscience", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "380:1--380:3", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00380", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00380", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 November 2017", ORCID-numbers = "Pradeep Reddy Raamana / 0000-0003-4662-0558; Stephen C. Strother / 0000-0002-3198-217X", } @Article{Zhang:2017:PIT, author = "Yuxuan Zhang and Jean Bilheux", title = "\pkg{ImagingReso}: A Tool for Neutron Resonance Imaging", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "407:1--407:3", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00407", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00407", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "17 November 2017", ORCID-numbers = "Yuxuan Zhang / 0000-0002-0083-1408; Jean Bilheux / 0000-0003-2172-6487", } @Article{Smith:2017:PUP, author = "Andrew P. Smith", title = "\pkg{UKCensusAPI}: python and {R} interfaces to the nomisweb {UK} census data {API}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "408:1--408:1", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00408", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00408", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 November 2017", ORCID-numbers = "Andrew P. Smith / 0000-0002-9951-6642", } @Article{Fayek:2017:PML, author = "Haytham M. Fayek", title = "\pkg{MatDL}: A Lightweight Deep Learning Library in {MATLAB}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "413:1--413:2", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00413", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/matlab.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00413", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 November 2017", ORCID-numbers = "Haytham M. Fayek / 0000-0002-1840-7605", } @Article{Hernandez:2017:PMI, author = "Carlos X. Hern{\'a}ndez and Vijay S. Pande", title = "\pkg{MDEntropy}: Information-Theoretic Analyses for Molecular Dynamics", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "427:1--427:2", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00427", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00427", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 November 2017", ORCID-numbers = "Carlos X. Hern{\'a}ndez / 0000-0002-8146-5904", } @Article{Jimenez:2017:PPB, author = "Jos{\'e} Jim{\'e}nez and Josep Ginebra", title = "\pkg{pyGPGO}: {Bayesian} Optimization for {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "431:1--431:3", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00431", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00431", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "02 November 2017", ORCID-numbers = "Jos{\'e} Jim{\'e}nez / 0000-0002-5335-7834; Josep Ginebra / 0000-0001-9521-9635", } @Article{Bloice:2017:PAI, author = "Marcus D. Bloice and Christof Stocker and Andreas Holzinger", title = "\pkg{Augmentor}: An Image Augmentation Library for Machine Learning", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "432:1--432:2", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00432", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00432", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 November 2017", ORCID-numbers = "Marcus D. Bloice / 0000-0002-2468-4086; Christof Stocker / 0000-0002-1276-7976; Andreas Holzinger / 0000-0002-6786-5194", } @Article{Renard:2017:PHO, author = "Philippe Renard", title = "\pkg{Hytool}: an open source {MATLAB} toolbox for the interpretation of hydraulic tests using analytical solutions", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "441:1--441:3", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00441", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/matlab.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00441", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 November 2017", ORCID-numbers = "Philippe Renard / 0000-0003-4504-435X", } @Article{Kironde:2017:PRD, author = "Henry Kironde and Benjamin D. Morris and Akash Goel and Andrew Zhang and Akshay Narasimha and Shivam Negi and David J. Harris and Deborah Gertrude Digges and Kapil Kumar and Amritanshu Jain and Kunal Pal and Kevinkumar Amipara and Prabh Simran Singh Baweja and Ethan P. White", title = "\pkg{Retriever}: Data Retrieval Tool", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "451:1--451:1", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00451", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00451", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 November 2017", ORCID-numbers = "Henry Kironde / 0000-0001-7105-5808; Benjamin D. Morris / 0000-0003-4418-1360; Akash Goel / 0000-0001-9878-0401; Andrew Zhang / 0000-0003-1148-7734; Akshay Narasimha / 0000-0002-3901-2610; Shivam Negi / 0000-0002-5637-0479; David J. Harris / 0000-0003-3332-9307; Deborah Gertrude Digges / 0000-0002-7840-5054; Kapil Kumar / 0000-0002-2292-1033; Amritanshu Jain / 0000-0003-1187-7900; Kunal Pal / 0000-0002-9657-0053; Kevinkumar Amipara / 0000-0001-5021-2018; Prabh Simran Singh Baweja / 0000-0003-3997-4470; Ethan P. White / 0000-0001-6728-7745", } @Article{Boettiger:2017:GPC, author = "Carl Boettiger", title = "Generating \pkg{CodeMeta} Metadata for {R} Packages", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "454:1--454:1", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00454", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00454", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "13 November 2017", ORCID-numbers = "Carl Boettiger / 0000-0002-1642-628X", } @Article{Datseris:2017:PDJ, author = "George Datseris", title = "\pkg{DynamicalBilliards.jl}: An easy-to-use, modular and extendable {Julia} package for {Dynamical Billiard} systems in two dimensions", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "19", pages = "458:1--458:4", month = nov, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00458", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00458", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "19 November 2017", ORCID-numbers = "George Datseris / 0000-0002-6427-2385", } @Article{Schmeisser:2017:PER, author = "Andre Schmei{\ss}er and Daniel Burkhart and Dominik Linn and Johannes Schnebele and Manuel Ettm{\"u}ller and Simone Gramsch and Walter Arne", title = "\pkg{Ensight4Matlab}: read, process, and write files in {EnSight{\reg}} Gold format from {C++} or {MATLAB{\reg}}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "20", pages = "217:1--217:1", month = dec, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00217", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/matlab.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00217", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 December 2017", ORCID-numbers = "Andre Schmei{\ss}er / 0000-0002-4400-9635; Simone Gramsch / 0000-0002-6720-9840; Walter Arne / 0000-0001-5364-3788", } @Article{Dandage:2017:PDC, author = "Rohan Dandage and Kausik Chakraborty", title = "\pkg{dms2dfe}: Comprehensive Workflow for Analysis of Deep Mutational Scanning Data", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "20", pages = "362:1--362:3", month = dec, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00362", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00362", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 December 2017", ORCID-numbers = "Rohan Dandage / 0000-0002-6421-2067; Kausik Chakraborty / 0000-0001-6000-8379", } @Article{Honkonen:2017:HDI, author = "Ilja Honkonen", title = "High-Dimensional Integrator", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "20", pages = "437:1--437:1", month = dec, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00437", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00437", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 December 2017", ORCID-numbers = "Ilja Honkonen / 0000-0002-9542-5866", } @Article{Delestre:2017:PFF, author = "Olivier Delestre and Fr{\'e}d{\'e}ric Darboux and Fran{\c{c}}ois James and Carine Lucas and Christian Laguerre and St{\'e}phane Cordier", title = "\pkg{FullSWOF}: Full Shallow-Water equations for Overland Flow", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "20", pages = "448:1--448:1", month = dec, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00448", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00448", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 December 2017", ORCID-numbers = "Carine Lucas / 0000-0003-1700-4553", } @Article{Chitta:2017:PRG, author = "Sachin Chitta and Eitan Marder-Eppstein and Wim Meeussen and Vijay Pradeep and Adolfo Rodr{\'\i}guez Tsouroukdissian and Jonathan Bohren and David Coleman and Bence Magyar and Gennaro Raiola and Mathias L{\"u}dtke and Enrique Fernandez Perdomo", title = "\pkg{ros\_control}: A generic and simple control framework for {ROS}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "20", pages = "456:1--456:5", month = dec, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00456", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00456", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 December 2017", ORCID-numbers = "Sachin Chitta / 0000-0003-4859-6096; Eitan Marder-Eppstein / 0000-0003-0940-7117; Wim Meeussen / 0000-0003-1905-4001; Vijay Pradeep / 0000-0002-8280-7275; Adolfo Rodr{\'\i}guez Tsouroukdissian / 0000-0002-3075-1329; Jonathan Bohren / 0000-0003-4568-6352; David Coleman / 0000-0001-6112-1795; Bence Magyar / 0000-0001-8455-8674; Gennaro Raiola / 0000-0003-1481-1106; Mathias L{\"u}dtke / 0000-0002-1835-3854; Enrique Fernandez Perdomo / 0000-0002-4881-0497", } @Article{Okada:2017:FGI, author = "Ai Okada and Kenichi Chiba and Hiroko Tanaka and Satoru Miyano and Yuichi Shiraishi", title = "A framework for generating interactive reports for cancer genome analysis", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "20", pages = "457:1--457:4", month = dec, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00457", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00457", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "06 December 2017", ORCID-numbers = "Ai Okada / 0000-0002-9782-5900; Yuichi Shiraishi / 0000-0001-6144-5845", } @Article{Suess:2017:PMM, author = "Daniel Suess and Milan Holz{\"a}pfel", title = "\pkg{mpnum}: A matrix product representation library for {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "20", pages = "465:1--465:2", month = dec, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00465", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00465", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 December 2017", ORCID-numbers = "Daniel Suess / 0000-0002-6354-457X; Milan Holz{\"a}pfel / 0000-0002-4687-5027", } @Article{Padgham:2017:PB, author = "Mark Padgham and Richard Ellison", title = "\pkg{bikedata}", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "20", pages = "471:1--471:1", month = dec, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00471", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00471", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 December 2017", ORCID-numbers = "Mark Padgham / 0000-0003-2172-5265", } @Article{Lockley:2017:PXE, author = "Steve Lockley and Claudio Benghi and Martin {\v{C}}ern{\'y}", title = "\pkg{Xbim.Essentials}: a library for interoperable building information applications", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "20", pages = "473:1--473:3", month = dec, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00473", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00473", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 December 2017", ORCID-numbers = "Claudio Benghi / 0000-0003-3252-5461; Martin {\v{C}}ern{\'y} / 0000-0003-2248-0781", } @Article{Harris:2017:EUP, author = "David J. Harris", title = "An easy-to-use \pkg{p5.js} {$3$D} object picker for visual artists", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "20", pages = "475:1--475:2", month = dec, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00475", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00475", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 December 2017", ORCID-numbers = "David J. Harris / 0000-0002-8321-2062", } @Article{Albers:2017:PTE, author = "Sam Albers", title = "\pkg{tidyhydat}: Extract and Tidy {Canadian} Hydrometric Data", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "20", pages = "511:1--511:4", month = dec, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00511", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00511", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 December 2017", ORCID-numbers = "Sam Albers / 0000-0002-9270-7884", } @Article{Shi:2017:CCD, author = "Sinan Shi and David P{\'e}rez-Su{\'a}rez and Steve Harris and Niall MacCallum and David Brealey and Mervyn Singer and James Hetherington", title = "Critical care data processing tools", journal = j-J-OPEN-SOURCE-SOFT, volume = "2", number = "20", pages = "513:1--513:4", month = dec, year = "2017", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00513", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00513", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "21 December 2017", ORCID-numbers = "Sinan Shi / 0000-0001-6935-0429; David P{\'e}rez-Su{\'a}rez / 0000-0003-0784-6909; Steve Harris / 0000-0002-4982-1374; Niall MacCallum / 0000-0001-6168-1506; David Brealey / 0000-0002-1982-3379; Mervyn Singer / 0000-0002-1042-6350; James Hetherington / 0000-0001-6993-0319", } @Article{LeBeau:2018:PHC, author = "Brandon LeBeau", title = "\pkg{highlightHTML}: {CSS} Formatting of {R} {Markdown} Documents", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "185:1--185:2", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00185", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00185", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 January 2018", ORCID-numbers = "Brandon LeBeau / 0000-0002-1265-8761", } @Article{Marzolin:2018:FGG, author = "Gilbert Marzolin and Olivier Gimenez", title = "Fitting a {Gamma--Gompertz} survival model to capture-recapture data collected on free-ranging animal populations", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "216:1--216:3", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00216", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00216", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "19 January 2018", ORCID-numbers = "Gilbert Marzolin / 0000-0002-7819-5739; Olivier Gimenez / 0000-0001-7001-5142", } @Article{Lindsay:2018:PMF, author = "Alexander Lindsay and Kathryn Huff", title = "\pkg{Moltres}: finite element based simulation of molten salt reactors", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "298:1--298:2", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00298", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00298", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 January 2018", ORCID-numbers = "Alexander Lindsay / 0000-0002-6988-2123; Kathryn Huff / 0000-0002-7075-6802", } @Article{Moore:2018:POS, author = "Jason K. Moore and Antonie van den Bogert", title = "\pkg{opty}: Software for trajectory optimization and parameter identification using direct collocation", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "300:1--300:4", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00300", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00300", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "30 January 2018", ORCID-numbers = "Jason K. Moore / 0000-0002-8698-6143; Antonie van den Bogert / 0000-0002-3791-3749", } @Article{Govan:2018:PBI, author = "Paul B. Govan", title = "\pkg{BayesianNetwork}: Interactive {Bayesian} Network Modeling and Analysis", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "425:1--425:2", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00425", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00425", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 January 2018", ORCID-numbers = "Paul B. Govan / 0000-0002-1821-8492", } @Article{Miranda:2018:PPR, author = "Lester James V. Miranda", title = "\pkg{PySwarms}: a research toolkit for Particle Swarm Optimization in {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "433:1--433:2", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00433", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00433", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "10 January 2018", ORCID-numbers = "Lester James V. Miranda / 0000-0002-7872-6464", } @Article{Lin:2018:PMP, author = "Jiao Y. Y. Lin and Fahima Islam and Max Kresh", title = "\pkg{Multiphonon}: Phonon Density of States tools for Inelastic Neutron Scattering Powder Data", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "440:1--440:2", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00440", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00440", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "29 January 2018", ORCID-numbers = "Jiao Y. Y. Lin / 0000-0001-9233-0100; Fahima Islam / 0000-0002-0265-0256; Max Kresh / 0000-0002-6990-8979", } @Article{Sheffield:2018:PSR, author = "Nathan Sheffield and V. P. Nagraj and Vince Reuter", title = "\pkg{simpleCache}: {R} caching for reproducible, distributed, large-scale projects", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "463:1--463:1", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00463", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00463", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "10 January 2018", ORCID-numbers = "Nathan Sheffield / 0000-0001-5643-4068; V. P. Nagraj / 0000-0003-0060-566X; Vince Reuter / 0000-0002-7967-976X", } @Article{Ankenbrand:2018:PCE, author = "Markus J. Ankenbrand and Simon Pfaff and Niklas Terhoeven and Musga Qureischi and Maik G{\"u}ndel and Clemens L. Wei{\ss} and Thomas Hackl and Frank F{\"o}rster", title = "\pkg{chloroExtractor}: extraction and assembly of the chloroplast genome from whole genome shotgun data", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "464:1--464:3", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00464", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00464", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "16 January 2018", ORCID-numbers = "Markus J. Ankenbrand / 0000-0002-6620-807X; Simon Pfaff / 0000-0001-8505-9439; Musga Qureischi / 0000-0001-9661-8494; Maik G{\"u}ndel / 0000-0002-0502-4576; Thomas Hackl / 0000-0002-0022-320X; Frank F{\"o}rster / 0000-0003-4166-5423", } @Article{Rodenhauser:2018:PPP, author = "Anton Rodenhauser and Wilson W. Good and Brian Zenger and Jess Tate and Kedar Aras and Brett Burton and Rob S. MacLeod", title = "\pkg{PFEIFER}: Preprocessing Framework for Electrograms Intermittently Fiducialized from Experimental Recordings", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "472:1--472:2", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00472", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00472", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "24 January 2018", ORCID-numbers = "Anton Rodenhauser / 0000-0003-1077-8230; Wilson W. Good / 0000-0002-0111-9076; Brian Zenger / 0000-0002-0039-9184; Jess Tate / 0000-0002-2934-1453; Kedar Aras / 0000-0002-9898-1462; Brett Burton / 0000-0002-3971-4225; Rob S. MacLeod / 0000-0002-0000-0356", } @Article{Garay:2018:PCA, author = "Pablo G. Garay and Jorge A. Vila and Osvaldo A. Martin", title = "\pkg{CheSweet}: An application to predict glycan's chemicals shifts", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "488:1--488:2", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00488", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00488", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 January 2018", ORCID-numbers = "Pablo G. Garay / 0000-0001-6604-0329; Osvaldo A. Martin / 0000-0001-7419-8978", } @Article{Dahlgren:2018:PPSa, author = "Bj{\"o}rn Dahlgren", title = "\pkg{pyodesys}: Straightforward numerical integration of {ODE} systems from {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "490:1--490:2", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00490", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00490", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "03 January 2018", ORCID-numbers = "Bj{\"o}rn Dahlgren / 0000-0003-0596-0222", } @Article{Roy:2018:PBS, author = "Pamphile T. Roy and Sophie Ricci and Romain Dupuis and Robin Campet and Jean-Christophe Jouhaud and Cyril Fournier", title = "\pkg{BATMAN}: Statistical analysis for expensive computer codes made easy", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "493:1--493:2", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00493", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00493", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "31 January 2018", ORCID-numbers = "Pamphile T. Roy / 0000-0001-9816-1416; Sophie Ricci / 0000-0002-4232-5626; Robin Campet / 0000-0002-4434-0854", } @Article{Warren:2018:VGS, author = "Ren{\'e} L. Warren", title = "Visualizing genome synteny with \pkg{xmatchview}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "497:1--497:4", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00497", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00497", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "19 January 2018", ORCID-numbers = "Ren{\'e} L. Warren / 0000-0002-9890-2293", } @Article{McGinnis:2018:CEP, author = "William D. McGinnis and Chapman Siu and Andre S. and Hanyu Huang", title = "Category Encoders: a \pkg{scikit-learn-contrib} package of transformers for encoding categorical data", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "501:1--501:2", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00501", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00501", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 January 2018", ORCID-numbers = "William D. McGinnis / 0000-0002-3009-9465; Chapman Siu / 0000-0002-2089-3796; Andre S. / 0000-0001-5104-0465; Hanyu Huang / 0000-0001-8503-1014", } @Article{Coyle:2018:POG, author = "Jeremy R. Coyle and Nima S. Hejazi", title = "\pkg{origami}: A Generalized Framework for Cross-Validation in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "512:1--512:3", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00512", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00512", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "30 January 2018", ORCID-numbers = "Jeremy R. Coyle / 0000-0002-9874-6649; Nima S. Hejazi / 0000-0002-7127-2789", } @Article{Spielman:2018:PPP, author = "Stephanie J. Spielman", title = "\pkg{phyphy}: {Python} package for facilitating the execution and parsing of {HyPhy} standard analyses", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "514:1--514:1", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00514", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00514", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "17 January 2018", ORCID-numbers = "Stephanie J. Spielman / 0000-0002-9090-4788", } @Article{Kortschak:2018:PAG, author = "R. Daniel Kortschak", title = "\pkg{arrgh}: a {Go} interface to the {OpenCPU} {R} server system", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "517:1--517:1", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00517", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00517", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 January 2018", ORCID-numbers = "R Daniel Kortschak / 0000-0001-8295-2301", } @Article{Dahlgren:2018:PPSb, author = "Bj{\"o}rn Dahlgren", title = "\pkg{pyneqsys}: Solve symbolically defined systems of non-linear equations numerically", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "531:1--531:2", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00531", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00531", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 January 2018", ORCID-numbers = "Bj{\"o}rn Dahlgren / 0000-0003-0596-0222", } @Article{Boisgerault:2018:PBB, author = "S{\'e}bastien Boisg{\'e}rault", title = "\pkg{Bitstream} --- Binary Data for Humans", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "541:1--541:2", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00541", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00541", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "31 January 2018", ORCID-numbers = "S{\'e}bastien Boisg{\'e}rault / 0000-0003-4685-8099", } @Article{Karpel:2018:PIG, author = "Joshua T. Karpel", title = "\pkg{IDESolver}: a general purpose integro-differential equation solver", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "542:1--542:2", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00542", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00542", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "30 January 2018", ORCID-numbers = "Joshua T. Karpel / 0000-0001-5968-9373", } @Article{Landau:2018:PDR, author = "William Michael Landau", title = "The \pkg{drake} {R} package: a pipeline toolkit for reproducibility and high-performance computing", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "21", pages = "550:1--550:1", month = jan, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00550", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00550", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "26 January 2018", ORCID-numbers = "William Michael Landau / 0000-0003-1878-3253", } @Article{Malengier:2018:POH, author = "Benny Malengier and Pavol Ki{\v{s}}on and James Tocknell and Claas Abert and Florian Bruckner and Marc-Antonio Bisotti", title = "\pkg{ODES}: a high level interface to {ODE} and {DAE} solvers", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "165:1--165:2", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00165", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00165", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "23 February 2018", ORCID-numbers = "Benny Malengier / 0000-0001-8383-8068; James Tocknell / 0000-0001-6637-6922; Claas Abert / 0000-0002-4999-0311; Florian Bruckner / 0000-0001-7778-6855", } @Article{Hiebert:2018:PCC, author = "James Hiebert and Alex J. Cannon and Trevor Murdock and Stephen Sobie and Arelia Werner", title = "\pkg{ClimDown}: Climate Downscaling in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "360:1--360:1", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00360", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00360", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 February 2018", ORCID-numbers = "James Hiebert / 0000-0002-4171-9586", } @Article{Freire:2018:PPR, author = "Danilo Freire and Robert Myles McDonnell", title = "\pkg{prisonbrief}: An {R} package that returns tidy data from the {World Prison Brief} website", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "361:1--361:1", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00361", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00361", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 February 2018", ORCID-numbers = "Danilo Freire / 0000-0002-4712-6810", } @Article{Mikhael:2018:PMM, author = "Shadia Mikhael and Calum Gray", title = "\pkg{Masks2Metrics (M2M)}: A {Matlab} Toolbox for Gold Standard Morphometrics", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "436:1--436:3", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00436", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/matlab.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00436", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 February 2018", ORCID-numbers = "Shadia Mikhael / 0000-0002-2490-9548", } @Article{Makowski:2018:PPP, author = "Dominique Makowski", title = "The \pkg{psycho} Package: an Efficient and Publishing-Oriented Workflow for Psychological Science", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "470:1--470:2", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00470", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00470", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 February 2018", ORCID-numbers = "Dominique Makowski / 0000-0001-5375-9967", } @Article{Howard:2018:PAR, author = "James P. {Howard II}", title = "Phonetic Algorithms in {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "480:1--480:2", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00480", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00480", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "14 February 2018", ORCID-numbers = "James P. Howard II / 0000-0003-4530-1547", } @Article{Owan:2018:PCO, author = "Parker Owan and Cameron Devine and W. Tony Piaskowy", title = "\pkg{CoreRobotics}: An object-oriented {C++} library with cross-language wrappers for cross-platform robot control", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "489:1--489:2", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00489", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00489", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 February 2018", ORCID-numbers = "Parker Owan / 0000-0003-1160-0426", } @Article{Lee:2018:PDD, author = "Jeongseok Lee and Michael X. Grey and Sehoon Ha and Tobias Kunz and Sumit Jain and Yuting Ye and Siddhartha S. Srinivasa and Mike Stilman and C. Karen Liu", title = "\pkg{DART}: Dynamic Animation and Robotics Toolkit", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "500:1--500:3", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00500", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00500", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 February 2018", ORCID-numbers = "Jeongseok Lee / 0000-0002-2146-7502; Michael X. Grey / 0000-0002-8159-2428; Sehoon Ha / 0000-0002-1972-328X; Tobias Kunz / 0000-0002-5614-2265; Sumit Jain / 0000-0003-2244-0077; Yuting Ye / 0000-0003-2643-7457; Siddhartha S. Srinivasa / 0000-0002-5091-106X; C. Karen Liu / 0000-0001-5926-0905", } @Article{Bovee:2018:PFT, author = "Roderick Bovee and Nick Greenfield", title = "\pkg{Finch}: a tool adding dynamic abundance filtering to genomic {MinHashing}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "505:1--505:2", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00505", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00505", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "01 February 2018", ORCID-numbers = "Roderick Bovee / 0000-0002-8819-9549; Nick Greenfield / 0000-0001-8637-406X", } @Article{Moerman:2018:PGG, author = "Kevin M. Moerman", title = "\pkg{GIBBON}: The {Geometry and Image-Based Bioengineering add-On}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "506:1--506:4", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00506", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00506", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "19 February 2018", ORCID-numbers = "Kevin M. Moerman / 0000-0003-3768-4269", } @Article{Gieseke:2018:PPP, author = "Robert Gieseke and Sven N. Willner and Matthias Mengel", title = "\pkg{Pymagicc}: A {Python} wrapper for the simple climate model {MAGICC}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "516:1--516:3", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00516", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00516", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 February 2018", ORCID-numbers = "Robert Gieseke / 0000-0002-1236-5109; Sven N. Willner / 0000-0001-6798-6247; Matthias Mengel / 0000-0001-6724-9685", } @Article{Sochat:2018:EFR, author = "Vanessa Sochat", title = "The Experiment Factory: Reproducible Experiment Containers", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "521:1--521:4", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00521", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00521", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 February 2018", ORCID-numbers = "Vanessa Sochat / 0000-0002-4387-3819", } @Article{Zaghdoudi:2018:PIR, author = "Taha Zaghdoudi", title = "\pkg{ivporbit}: An {R} package to estimate the instrumental variables probit model", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "523:1--523:1", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00523", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00523", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "23 February 2018", ORCID-numbers = "Taha Zaghdoudi / 0000-0002-4488-5774", } @Article{Terhoeven:2018:PRG, author = "Niklas Terhoeven and J{\"o}rg Schultz and Thomas Hackl", title = "\pkg{reper}: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "527:1--527:4", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00527", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00527", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 February 2018", ORCID-numbers = "Niklas Terhoeven / 0000-0002-8669-0000; Thomas Hackl / 0000-0002-0022-320X", } @Article{Bossek:2018:PGM, author = "Jakob Bossek", title = "\pkg{grapherator}: A Modular Multi-Step Graph Generator", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "528:1--528:3", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00528", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00528", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "19 February 2018", ORCID-numbers = "Jakob Bossek / 0000-0002-4121-4668", } @Article{Demo:2018:PPP, author = "Nicola Demo and Marco Tezzele and Gianluigi Rozza", title = "\pkg{PyDMD}: {Python Dynamic Mode Decomposition}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "530:1--530:3", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00530", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00530", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 February 2018", ORCID-numbers = "Nicola Demo / 0000-0003-3107-9738; Marco Tezzele / 0000-0001-9747-6328; Gianluigi Rozza / 0000-0002-0810-8812", } @Article{Pitkin:2018:PPP, author = "Matthew Pitkin", title = "\pkg{psrqpy}: a python interface for querying the {ATNF} pulsar catalogue", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "538:1--538:2", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00538", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00538", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "19 February 2018", ORCID-numbers = "Matthew Pitkin / 0000-0003-4548-526X", } @Article{Bilogur:2018:PMM, author = "Aleksey Bilogur", title = "\pkg{Missingno}: a missing data visualization suite", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "547:1--547:4", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00547", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00547", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 February 2018", ORCID-numbers = "Aleksey Bilogur / 0000-0002-0066-5825", } @Article{Reinecke:2018:PGF, author = "Robert Reinecke", title = "\pkg{G$^3$M-f} a global gradient-based groundwater modelling framwork", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "548:1--548:2", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00548", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00548", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 February 2018", ORCID-numbers = "Robert Reinecke / 0000-0001-5699-8584", } @Article{Aaslin:2018:PCQ, author = "Matilda {\AA}slin and Monika Brandt and Johan Dahlberg", title = "\pkg{CheckQC}: Quick quality control of {Illumina} sequencing runs", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "556:1--556:2", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00556", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00556", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 February 2018", ORCID-numbers = "Matilda {\AA}slin / 0000-0002-2450-6415; Monika Brandt / 0000-0002-8184-9465; Johan Dahlberg / 0000-0001-6962-1460", } @Article{Wrobel:2018:PRR, author = "Julia Wrobel", title = "\pkg{register}: Registration for Exponential Family Functional Data", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "557:1--557:2", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00557", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00557", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "19 February 2018", ORCID-numbers = "Julia Wrobel / 0000-0001-6783-1421", } @Article{Yu:2018:PEU, author = "Chi-Lin Yu and Ching-Fan Sheu", title = "\pkg{EFAshiny}: An User-Friendly Shiny Application for Exploratory Factor Analysis", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "567:1--567:2", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00567", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00567", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 February 2018", ORCID-numbers = "Chi-Lin Yu / 0000-0002-4381-7163; Ching-Fan Sheu / 0000-0002-5978-5768", } @Article{Anonymous:2018:PCC, author = "Anonymous", title = "\pkg{ChebTools}: {C++11} (and {Python}) tools for working with {Chebyshev} expansions", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "569:1--569:3", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.1137/110838297", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00569", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 February 2018", remark = "ERROR: The DOI in this entry resolves to a SIAM Review article (v55 n2 pp375--396 January 2013).", } @Article{LaZerte:2018:PWD, author = "Stefanie E. LaZerte and Sam Albers", title = "\pkg{weathercan}: Download and format weather data from {Environment and Climate Change Canada}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "571:1--571:2", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00571", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00571", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "11 February 2018", ORCID-numbers = "Stefanie E. LaZerte / 0000-0002-7690-8360", } @Article{Tocknell:2018:PHT, author = "James Tocknell", title = "\pkg{h5preserve}: Thin wrapper around \pkg{h5py}, inspired by \pkg{camel}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "22", pages = "581:1--581:2", month = feb, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00581", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00581", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 February 2018", ORCID-numbers = "James Tocknell / 0000-0001-6637-6922", } @Article{Mullen:2018:PUH, author = "Lincoln A. Mullen and Jordan Bratt", title = "\pkg{USAboundaries}: Historical and Contemporary Boundaries of the {United States of America}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "314:1--314:2", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00314", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00314", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 March 2018", ORCID-numbers = "Lincoln A. Mullen / 0000-0001-5103-6917; Jordan Bratt / 0000-0001-9051-7203", } @Article{Fachada:2018:PMM, author = "Nuno Fachada and Agostinho C. Rosa", title = "\pkg{micompm}: A {MATLAB\slash Octave} toolbox for multivariate independent comparison of observations", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "430:1--430:1", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00430", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/matlab.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00430", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "29 March 2018", ORCID-numbers = "Nuno Fachada / 0000-0002-8487-5837; Agostinho C. Rosa / 0000-0001-5165-3114", } @Article{Mulryne:2018:PPP, author = "David J. Mulryne and John W. Ronayne", title = "\pkg{PyTransport}: A {Python} package for the calculation of inflationary correlation functions", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "494:1--494:2", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00494", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00494", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 March 2018", ORCID-numbers = "John W. Ronayne / 0000-0001-6464-6466", } @Article{Morel:2018:PGG, author = "Pierre Morel", title = "\pkg{Gramm}: grammar of graphics plotting in {Matlab}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "568:1--568:4", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00568", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/matlab.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00568", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "06 March 2018", ORCID-numbers = "Pierre Morel / 0000-0003-0984-7016", } @Article{Laurinec:2018:PTR, author = "Peter Laurinec", title = "\pkg{TSrepr} {R} package: Time Series Representations", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "577:1--577:2", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00577", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00577", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 March 2018", ORCID-numbers = "Peter Laurinec / 0000-0002-3501-8783", } @Article{Hirsch:2018:PPD, author = "Michael Hirsch", title = "\pkg{PyMap3D}: {$3$-D} coordinate conversions for terrestrial and geospace environments", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "580:1--580:2", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00580", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00580", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 March 2018", ORCID-numbers = "Michael Hirsch / 0000-0002-1637-6526", } @Article{Mount:2018:PVR, author = "John Mount and Nina Zumel", title = "The \pkg{vtreat} {R} package: a statistically sound data processor for predictive modeling", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "584:1--584:2", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00584", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00584", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 March 2018", ORCID-numbers = "John Mount / 0000-0002-3696-2012; Nina Zumel / 0000-0001-8831-0190", } @Article{Willcox:2018:PPI, author = "Donald E. Willcox and Michael Zingale", title = "\pkg{pynucastro}: an interface to nuclear reaction rates and code generator for reaction network equations", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "588:1--588:3", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00588", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00588", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "18 March 2018", ORCID-numbers = "Donald E. Willcox / 0000-0003-2300-5165; Michael Zingale / 0000-0001-8401-030X", } @Article{Wahls:2018:PFS, author = "Sander Wahls and Shrinivas Chimmalgi and Peter J. Prins", title = "\pkg{FNFT}: A Software Library for Computing Nonlinear {Fourier} Transforms", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "597:1--597:2", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00597", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00597", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "31 March 2018", ORCID-numbers = "Sander Wahls / 0000-0001-5159-0918; Shrinivas Chimmalgi / 0000-0002-5868-3102; Peter J. Prins / 0000-0003-4692-5538", } @Article{Datseris:2018:PDJ, author = "George Datseris", title = "\pkg{DynamicalSystems.jl}: A {Julia} software library for chaos and nonlinear dynamics", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "598:1--598:5", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.5334/jors.151", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00598", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "14 March 2018", ORCID-numbers = "George Datseris / 0000-0002-6427-2385", } @Article{Bender:2018:PCC, author = "Andreas Bender and Alexander Bauer", title = "\pkg{coalitions}: Coalition probabilities in multi-party democracies", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "606:1--606:2", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00606", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00606", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "11 March 2018", ORCID-numbers = "Andreas Bender / 0000-0001-5628-8611; Alexander Bauer / 0000-0003-3495-5131", } @Article{Vrbancic:2018:PNP, author = "Grega Vrban{\v{c}}i{\v{c}} and Lucija Brezo{\v{c}}nik and Uro{\v{s}} Mlakar and Du{\v{s}}an Fister and Iztok {Fister, Jr.}", title = "\pkg{NiaPy}: {Python} microframework for building nature-inspired algorithms", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "613:1--613:3", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00613", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00613", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 March 2018", ORCID-numbers = "Grega Vrban{\v{c}}i{\v{c}} / 0000-0003-0723-3889; Lucija Brezo{\v{c}}nik / 0000-0002-3622-428X; Uro{\v{s}} Mlakar / 0000-0002-4278-6078; Du{\v{s}}an Fister / 0000-0002-9604-0554; Iztok Fister, Jr. / 0000-0002-6418-1272", } @Article{Thorley:2018:PCR, author = "Joe Thorley", title = "\pkg{checkr}: An {R} package for Assertive Programming", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "624:1--624:1", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00624", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00624", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "26 March 2018", ORCID-numbers = "Joe Thorley / 0000-0002-7683-4592", } @Article{Vantas:2018:PHR, author = "Konstantinos Vantas", title = "\pkg{hydroscoper}: {R} interface to the {Greek National Data Bank for Hydrological and Meteorological Information}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "625:1--625:2", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00625", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00625", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "14 March 2018", ORCID-numbers = "Konstantinos Vantas / 0000-0001-6387-8791", } @Article{Nolan:2018:PIR, author = "Rory Nolan and Sergi Padilla-Parra", title = "\pkg{ijtiff}: An {R} package providing {TIFF I/O} for {ImageJ} users", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "633:1--633:2", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00633", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00633", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "16 March 2018", ORCID-numbers = "Rory Nolan / 0000-0002-5239-4043; Sergi Padilla-Parra / 0000-0002-8010-9481", } @Article{Gasparini:2018:PCR, author = "Alessandro Gasparini", title = "\pkg{comorbidity}: An {R} package for computing comorbidity scores", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "648:1--648:3", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00648", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00648", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "29 March 2018", ORCID-numbers = "Alessandro Gasparini / 0000-0002-8319-7624", } @Article{Mullen:2018:FCT, author = "Lincoln A. Mullen and Kenneth Benoit and Os Keyes and Dmitry Selivanov and Jeffrey Arnold", title = "Fast, Consistent Tokenization of Natural Language Text", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "23", pages = "655:1--655:3", month = mar, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00655", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00655", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 March 2018", ORCID-numbers = "Lincoln A. Mullen / 0000-0001-5103-6917; Kenneth Benoit / 0000-0002-0797-564X; Os Keyes / 0000-0001-5196-609X; Jeffrey Arnold / 0000-0001-9953-3904", } @Article{Dahlgren:2018:PCP, author = "Bj{\"o}rn Dahlgren", title = "\pkg{ChemPy}: A package useful for chemistry written in {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "565:1--565:2", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00565", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00565", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 April 2018", ORCID-numbers = "Bj{\"o}rn Dahlgren / 0000-0003-0596-0222", } @Article{Ibarra-Espinosa:2018:PER, author = "Sergio Ibarra-Espinosa and Daniel Schuch and Edmilson Dias de Freitas", title = "\pkg{eixport}: An {R} package to export emissions to atmospheric models", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "607:1--607:4", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00607", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00607", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "25 April 2018", ORCID-numbers = "Sergio Ibarra-Espinosa / 0000-0002-3162-1905; Daniel Schuch / 0000-0001-5977-4519; Edmilson Dias de Freitas / 0000-0001-8783-2747", } @Article{Cardellini:2018:PTO, author = "Giuseppe Cardellini and Chris Mutel", title = "\pkg{Temporalis}: an open source software for dynamic {LCA}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "612:1--612:2", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00612", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00612", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "17 April 2018", ORCID-numbers = "Giuseppe Cardellini / 0000-0003-0442-3580; Chris Mutel / 0000-0002-7898-9862", } @Article{Mogensen:2018:POM, author = "Patrick K. Mogensen and Asbj{\o}rn N. Riseth", title = "\pkg{Optim}: A mathematical optimization package for {Julia}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "615:1--615:3", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00615", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00615", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 April 2018", ORCID-numbers = "Patrick K. Mogensen / 0000-0002-4910-1932; Asbj{\o}rn N. Riseth / 0000-0002-5861-7885", } @Article{Amsel:2018:PMM, author = "Daniel Amsel and Andr{\'e} Billion and Andreas Vilcinskas and Frank F{\"o}rster", title = "\pkg{microPIECE} --- {microRNA} pipeline enhanced by {CLIP} experiments", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "616:1--616:4", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00616", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00616", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "10 April 2018", ORCID-numbers = "Daniel Amsel / 0000-0002-0512-9802; Andreas Vilcinskas / 0000-0001-8276-4968; Frank F{\"o}rster / 0000-0003-4166-5423", } @Article{Dennis:2018:MFI, author = "Louise A. Dennis", title = "The {MCAPL} Framework including the {Agent Infrastructure Layer} and {Agent Java Pathfinder}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "617:1--617:2", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00617", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/java2010.bib; https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00617", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "30 April 2018", } @Article{Raschka:2018:PMP, author = "Sebastian Raschka", title = "\pkg{MLxtend}: Providing machine learning and data science utilities and extensions to {Python}'s scientific computing stack", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "638:1--638:2", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00638", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00638", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 April 2018", ORCID-numbers = "Sebastian Raschka / 0000-0001-6989-4493", } @Article{Ben-Ari:2018:PLS, author = "Mordechai (Moti) Ben-Ari", title = "\pkg{LearnSAT}: A {SAT} Solver for Education", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "639:1--639:2", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00639", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00639", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "26 April 2018", ORCID-numbers = "Mordechai (Moti) Ben-Ari / 0000-0002-2091-5107", } @Article{Youngflesh:2018:PMT, author = "Casey Youngflesh", title = "\pkg{MCMCvis}: Tools to Visualize, Manipulate, and Summarize {MCMC} Output", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "640:1--640:3", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00640", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00640", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "10 April 2018", ORCID-numbers = "Casey Youngflesh / 0000-0001-6343-3311", } @Article{Finn:2018:POO, author = "Caley Finn", title = "\pkg{OpenEPSim}: An Open Exclusion Process Simulation Tool", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "650:1--650:2", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00650", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00650", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 April 2018", ORCID-numbers = "Caley Finn / 0000-0001-8593-1987", } @Article{Hucka:2018:PSS, author = "Michael Hucka", title = "\pkg{Spiral}: splitters for identifiers in source code files", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "653:1--653:3", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00653", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00653", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 April 2018", ORCID-numbers = "Michael Hucka / 0000-0001-9105-5960", } @Article{Tang:2018:PAR, author = "Yuan Tang", title = "\pkg{autoplotly}: An {R} package for automatic generation of interactive visualizations for statistical results", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "657:1--657:2", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00657", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00657", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "19 April 2018", ORCID-numbers = "Yuan Tang / 0000-0001-5243-233X", } @Article{Rose:2018:PCP, author = "Brian E. J. Rose", title = "\pkg{CLIMLAB}: a {Python} toolkit for interactive, process-oriented climate modeling", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "659:1--659:2", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00659", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00659", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 April 2018", ORCID-numbers = "Brian E. J. Rose / 0000-0002-9961-3821", } @Article{Demo:2018:PEE, author = "Nicola Demo and Marco Tezzele and Gianluigi Rozza", title = "\pkg{EZyRB}: {Easy Reduced Basis} method", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "661:1--661:3", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00661", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00661", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "11 April 2018", ORCID-numbers = "Nicola Demo / 0000-0003-3107-9738; Marco Tezzele / 0000-0001-9747-6328; Gianluigi Rozza / 0000-0002-0810-8812", } @Article{Ginn:2018:PQR, author = "Jasper Ginn", title = "\pkg{qualtRics}: retrieve survey data using the {Qualtrics API}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "690:1--690:1", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00690", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00690", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "21 April 2018", ORCID-numbers = "Jasper Ginn / 0000-0002-5019-2923", } @Article{Hoffimann:2018:PGJ, author = "J{\'u}lio Hoffimann", title = "\pkg{GeoStats.jl} --- High-performance geostatistics in {Julia}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "692:1--692:4", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00692", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00692", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "25 April 2018", ORCID-numbers = "J{\'u}lio Hoffimann / 0000-0003-2789-297X", } @Article{Zeki:2018:PEE, author = "Sebastian S. Zeki", title = "\pkg{EndoMineR} for the extraction of endoscopic and associated pathology data from medical reports", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "24", pages = "701:1--701:2", month = apr, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00701", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00701", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 April 2018", ORCID-numbers = "Sebastian S. Zeki / 0000-0003-1673-2663", } @Article{Allevius:2018:PSS, author = "Benjamin All{\'e}vius", title = "\pkg{scanstatistics}: space-time anomaly detection using scan statistics", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "515:1--515:2", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00515", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00515", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "09 May 2018", ORCID-numbers = "Benjamin All{\'e}vius / 0000-0002-0927-7183", } @Article{Chuang:2018:PPT, author = "Pi-Yueh Chuang and Olivier Mesnard and Anush Krishnan and Lorena A. Barba", title = "\pkg{PetIBM}: toolbox and applications of the immersed-boundary method on distributed-memory architectures", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "558:1--558:5", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00558", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00558", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "29 May 2018", ORCID-numbers = "Pi-Yueh Chuang / 0000-0001-6330-2709; Olivier Mesnard / 0000-0001-5335-7853; Anush Krishnan / 0000-0001-6409-7022; Lorena A. Barba / 0000-0001-5812-2711", } @Article{Ferres:2018:PPA, author = "Ignacio Ferr{\'e}s and Gregorio Iraola", title = "\pkg{Phylen}: automatic phylogenetic reconstruction using the {EggNOG} database", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "593:1--593:3", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00593", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00593", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 May 2018", ORCID-numbers = "Ignacio Ferr{\'e}s / 0000-0003-0910-6568; Gregorio Iraola / 0000-0002-6516-3404", } @Article{Hucka:2018:PNN, author = "Michael Hucka", title = "\pkg{Nostril}: A nonsense string evaluator written in {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "596:1--596:2", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00596", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00596", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "11 May 2018", ORCID-numbers = "Michael Hucka / 0000-0001-9105-5960", } @Article{Innes:2018:PFE, author = "Mike Innes", title = "\pkg{Flux}: Elegant machine learning with {Julia}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "602:1--602:1", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00602", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00602", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "03 May 2018", ORCID-numbers = "Mike Innes / 0000-0003-0788-0242", } @Article{Hudak:2018:OOW, author = "Dave Hudak and Doug Johnson and Alan Chalker and Jeremy Nicklas and Eric Franz and Trey Dockendorf and Brian L. McMichael", title = "Open {OnDemand}: A web-based client portal for {HPC} centers", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "622:1--622:2", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00622", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00622", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "14 May 2018", ORCID-numbers = "Dave Hudak / 0000-0002-9043-0850; Doug Johnson / 0000-0002-4331-8508; Alan Chalker / 0000-0002-5475-8779; Jeremy Nicklas / 0000-0003-3208-7588; Eric Franz / 0000-0002-9662-412X; Trey Dockendorf / 0000-0002-5494-0968; Brian L. McMichael / 0000-0001-7455-6691", } @Article{Smith:2018:PHC, author = "Andrew P. Smith", title = "\pkg{humanleague}: a {C++} microsynthesis package with {R} and {Python} interfaces", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "629:1--629:1", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00629", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00629", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "03 May 2018", ORCID-numbers = "Andrew P. Smith / 0000-0002-9951-6642", } @Article{Brown:2018:PHP, author = "Ryan C. Brown and Joshua Moser", title = "\pkg{HSImage}: A {Python} and {C++} library to allow interaction with {ENVI-BIL} hyperspectral images", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "630:1--630:2", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00630", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00630", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "21 May 2018", ORCID-numbers = "Ryan C. Brown / 0000-0002-3832-775X", } @Article{Ortiz-Gil:2018:MFC, author = "Amelia Ortiz-Gil and Jordi Burguet-Castell", title = "Mapelia and friends: create {$3$D} models from maps", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "660:1--660:2", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00660", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00660", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 May 2018", ORCID-numbers = "Amelia Ortiz-Gil / 0000-0003-1485-0252; Jordi Burguet-Castell / 0000-0002-9198-5380", } @Article{Chennu:2018:PMM, author = "Arjun Chennu", title = "\pkg{MicroBenthos}: a modeling framework for microbial benthic ecology", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "674:1--674:2", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00674", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00674", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 May 2018", ORCID-numbers = "Arjun Chennu / 0000-0002-0389-5589", } @Article{Andersen:2018:PMM, author = "Mikkel Meyer Andersen", title = "\pkg{malan}: {MAle Lineage ANalysis}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "684:1--684:2", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00684", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00684", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 May 2018", ORCID-numbers = "Mikkel Meyer Andersen / 0000-0002-0234-0266", } @Article{Blankrot:2018:PPS, author = "Boaz Blankrot and Clemens Heitzinger", title = "\pkg{ParticleScattering}: Solving and optimizing multiple-scattering problems in {Julia}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "691:1--691:3", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00691", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00691", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "14 May 2018", ORCID-numbers = "Boaz Blankrot / 0000-0003-3364-9298; Clemens Heitzinger / 0000-0003-1613-5164", } @Article{Anhoj:2018:PQQ, author = "Jacob Anh{\o}j", title = "\pkg{qicharts2}: Quality Improvement Charts for {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "699:1--699:2", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00699", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00699", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "17 May 2018", ORCID-numbers = "Jacob Anh{\o}j / 0000-0002-7701-1774", } @Article{Pearse:2018:PSD, author = "William D. Pearse and Scott A. Chamberlain", title = "\pkg{Suppdata}: Downloading Supplementary Data from Published Manuscripts", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "721:1--721:2", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00721", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00721", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "03 May 2018", ORCID-numbers = "William D. Pearse / 0000-0002-6241-3164; Scott A. Chamberlain / 0000-0003-1444-9135", } @Article{Haghighi:2018:PPM, author = "Sepand Haghighi and Masoomeh Jasemi and Shaahin Hessabi and Alireza Zolanvari", title = "\pkg{PyCM}: Multiclass confusion matrix library in {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "729:1--729:2", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00729", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00729", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 May 2018", ORCID-numbers = "Sepand Haghighi / 0000-0001-9450-2375; Masoomeh Jasemi / 0000-0002-4831-1698; Shaahin Hessabi / 0000-0003-3193-2567; Alireza Zolanvari / 0000-0003-2367-8343", } @Article{Turner:2018:PQR, author = "Stephen D. Turner", title = "\pkg{qqman}: an {R} package for visualizing {GWAS} results using {Q-Q} and {Manhattan} plots", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "731:1--731:2", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00731", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00731", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "19 May 2018", ORCID-numbers = "Stephen D. Turner / 0000-0001-9140-9028", } @Article{James:2018:PDP, author = "Ryan G. James and Christopher J. Ellison and James P. Crutchfield", title = "\pkg{dit}: a {Python} package for discrete information theory", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "738:1--738:3", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00738", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00738", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "31 May 2018", ORCID-numbers = "Ryan G. James / 0000-0003-2149-9085", } @Article{Izzo:2018:VMT, author = "Richard Izzo and David Steinman and Simone Manini and Luca Antiga", title = "The Vascular Modeling Toolkit: A {Python} Library for the Analysis of Tubular Structures in Medical Images", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "25", pages = "745:1--745:5", month = may, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00745", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00745", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "26 May 2018", ORCID-numbers = "Richard Izzo / 0000-0002-0811-6513; David Steinman / 0000-0002-7963-1168; Simone Manini / 0000-0003-4350-659X; Luca Antiga / 0000-0002-8367-227X", } @Article{Anonymous:2018:PKE, author = "Anonymous", title = "\pkg{kima}: Exoplanet detection in radial velocities", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "487:1--487:3", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00487", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00487", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "19 June 2018", } @Article{Cully:2018:PLF, author = "Antoine Cully and Konstantinos Chatzilygeroudis and Federico Allocati and Jean-Baptiste Mouret", title = "\pkg{Limbo}: A Flexible High-performance Library for {Gaussian} Processes modeling and Data-Efficient Optimization", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "545:1--545:3", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00545", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00545", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "26 June 2018", ORCID-numbers = "Antoine Cully / 0000-0002-3190-7073; Konstantinos Chatzilygeroudis / 0000-0003-3585-1027; Jean-Baptiste Mouret / 0000-0002-2513-027X", } @Article{Doddridge:2018:PAI, author = "Edward W. Doddridge and Alexey Radul", title = "\pkg{Aronnax}: An idealised isopycnal ocean model", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "592:1--592:2", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.1016/j.ocemod.2017.03.012", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00592", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 June 2018", ORCID-numbers = "Edward W. Doddridge / 0000-0002-6097-5729", } @Article{Fasnacht:2018:PMP, author = "Laurent Fasnacht", title = "\pkg{mmappickle}: {Python 3} module to store memory-mapped \pkg{numpy} array in \pkg{pickle} format", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "651:1--651:2", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00651", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00651", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "18 June 2018", ORCID-numbers = "Laurent Fasnacht / 0000-0002-9853-8209", } @Article{Wood:2018:PQQ, author = "Tobias C. Wood", title = "\pkg{QUIT}: {QUantitative} Imaging Tools", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "656:1--656:2", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00656", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00656", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "21 June 2018", ORCID-numbers = "Tobias C. Wood / 0000-0001-7640-5520", } @Article{Krebber:2018:PMP, author = "Manuel Krebber and Henrik Barthels", title = "\pkg{MatchPy}: Pattern Matching in {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "670:1--670:2", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00670", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00670", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "21 June 2018", ORCID-numbers = "Manuel Krebber / 0000-0001-5038-1102; Henrik Barthels / 0000-0001-6744-3605", } @Article{Green:2018:PDP, author = "Gregory M. Green", title = "\pkg{dustmaps}: A {Python} interface for maps of interstellar dust", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "695:1--695:2", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00695", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00695", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 June 2018", ORCID-numbers = "Gregory M. Green / 0000-0001-5417-2260", } @Article{Wette:2018:POL, author = "Karl Wette and Reinhard Prix and David Keitel and Matthew Pitkin and Christoph Dreissigacker and John T. Whelan and Paola Leaci", title = "\pkg{OctApps}: a library of {Octave} functions for continuous gravitational-wave data analysis", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "707:1--707:3", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00707", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/matlab.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00707", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "06 June 2018", ORCID-numbers = "Karl Wette / 0000-0002-4394-7179; Reinhard Prix / 0000-0002-3789-6424; David Keitel / 0000-0002-2824-626X; Matthew Pitkin / 0000-0003-4548-526X; John T. Whelan / 0000-0001-5710-6576", } @Article{Iravanian:2018:PFT, author = "Shahriar Iravanian", title = "\pkg{fib-tf}: A {TensorFlow}-based Cardiac Electrophysiology Simulator", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "719:1--719:2", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00719", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00719", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "01 June 2018", ORCID-numbers = "Shahriar Iravanian / 0000-0003-2132-1543", } @Article{Curtin:2018:PMF, author = "Ryan R. Curtin and Marcus Edel and Mikhail Lozhnikov and Yannis Mentekidis and Sumedh Ghaisas and Shangtong Zhang", title = "\pkg{mlpack 3}: a fast, flexible machine learning library", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "726:1--726:2", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00726", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00726", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "18 June 2018", ORCID-numbers = "Ryan R. Curtin / 0000-0002-9903-8214; Marcus Edel / 0000-0001-5445-7303; Mikhail Lozhnikov / 0000-0002-8727-0091; Yannis Mentekidis / 0000-0003-3860-9885; Sumedh Ghaisas / 0000-0003-3753-9029; Shangtong Zhang / 0000-0003-4255-1364", } @Article{Mirzaev:2018:PEP, author = "Inom Mirzaev and Drew F. K. Williamson and Jacob G. Scott", title = "\pkg{egtplot}: A {Python} Package for Three-Strategy Evolutionary Games", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "735:1--735:4", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00735", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00735", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "17 June 2018", ORCID-numbers = "Inom Mirzaev / 0000-0003-1493-1802; Drew F. K. Williamson / 0000-0003-1745-8846; Jacob G. Scott / 0000-0003-2971-7673", } @Article{Gasparini:2018:PRS, author = "Alessandro Gasparini", title = "\pkg{rsimsum}: Summarise results from {Monte Carlo} simulation studies", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "739:1--739:3", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00739", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00739", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 June 2018", ORCID-numbers = "Alessandro Gasparini / 0000-0002-8319-7624", } @Article{Bourbeau:2018:PPP, author = "James Bourbeau and Zigfried Hampel-Arias", title = "\pkg{PyUnfold}: A {Python} package for iterative unfolding", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "741:1--741:3", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00741", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00741", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 June 2018", ORCID-numbers = "James Bourbeau / 0000-0003-2164-7789; Zigfried Hampel-Arias / 0000-0003-0253-9117", } @Article{Andersen:2018:DLM, author = "Mikkel Meyer Andersen", title = "Discrete {Laplace} mixture model with applications in forensic genetics", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "748:1--748:3", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00748", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00748", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 June 2018", ORCID-numbers = "Mikkel Meyer Andersen / 0000-0002-0234-0266", } @Article{Smith:2018:POP, author = "Daniel G. A. Smith and Johnnie Gray", title = "\pkg{opt\_einsum} --- A {Python} package for optimizing contraction order for einsum-like expressions", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "753:1--753:3", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00753", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00753", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "29 June 2018", ORCID-numbers = "Daniel G. A. Smith / 0000-0001-8626-0900; Johnnie Gray / 0000-0001-9461-3024", } @Article{Ludecke:2018:PSD, author = "Daniel L{\"u}decke", title = "\pkg{sjmisc}: Data and Variable Transformation Functions", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "754:1--754:2", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00754", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00754", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 June 2018", ORCID-numbers = "Daniel L{\"u}decke / 0000-0002-8895-3206", } @Article{Drost:2018:PPI, author = "Hajk-Georg Drost", title = "\pkg{Philentropy}: Information Theory and Distance Quantification with {R}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "765:1--765:4", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00765", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00765", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "11 June 2018", ORCID-numbers = "Hajk-Georg Drost / 0000-0002-1567-306X", } @Article{Laros:2018:GBF, author = "Jeroen F. J. Laros", title = "General binary file parser", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "766:1--766:1", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00766", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00766", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "21 June 2018", } @Article{Ludecke:2018:PGT, author = "Daniel L{\"u}decke", title = "\pkg{ggeffects}: Tidy Data Frames of Marginal Effects from Regression Models", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "772:1--772:5", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00772", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00772", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "29 June 2018", ORCID-numbers = "Daniel L{\"u}decke / 0000-0002-8895-3206", } @Article{Jackson:2018:PGB, author = "Adam J. Jackson and Alex M. Ganose and Anna Regoutz and Russell G. Egdell and David O. Scanlon", title = "\pkg{Galore}: Broadening and weighting for simulation of photoelectron spectroscopy", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "773:1--773:6", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00773", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00773", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 June 2018", ORCID-numbers = "Adam J. Jackson / 0000-0001-5272-6530; Alex M. Ganose / 0000-0002-4486-3321; Anna Regoutz / 0000-0002-3747-3763; David O. Scanlon / 0000-0001-9174-8601", } @Article{Sochat:2018:PHC, author = "Vanessa Sochat", title = "\pkg{HelpMe} Command Line Helper Utility", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "775:1--775:3", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00775", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00775", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 June 2018", ORCID-numbers = "Vanessa Sochat / 0000-0002-4387-3819", } @Article{Hagan:2018:PPO, author = "David H. Hagan and Andrew Tolmie and Jakub Trochim", title = "\pkg{py-opc}: operate the {Alphasense OPC-N2} from a {raspberry pi} or other popular microcontrollers\slash microcomputers", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "782:1--782:2", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00782", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00782", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "29 June 2018", ORCID-numbers = "David H. Hagan / 0000-0001-5111-4671", } @Article{Molnar:2018:PIR, author = "Christoph Molnar and Giuseppe Casalicchio and Bernd Bischl", title = "\pkg{iml}: An {R} package for Interpretable Machine Learning", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "786:1--786:2", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00786", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00786", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "03 July 2018", ORCID-numbers = "Christoph Molnar / 0000-0003-2331-868X; Giuseppe Casalicchio / 0000-0001-5324-5966; Bernd Bischl / 0000-0001-6002-6980", } @Article{Wilkinson:2018:PPR, author = "Shaun P. Wilkinson and Simon K. Davy", title = "\pkg{phylogram}: an {R} package for phylogenetic analysis with nested lists", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "26", pages = "790:1--790:2", month = jun, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00790", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00790", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 June 2018", ORCID-numbers = "Shaun P. Wilkinson / 0000-0002-7332-7931; Simon K. Davy / 0000-0003-3584-5356", } @Article{LeBeau:2018:PPS, author = "Brandon LeBeau", title = "\pkg{pdfsearch}: Search Tools for {PDF} Files", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "27", pages = "668:1--668:2", month = jul, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00668", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00668", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 July 2018", ORCID-numbers = "Brandon LeBeau / 0000-0002-1265-8761", } @Article{Haghighi:2018:POO, author = "Sepand Haghighi and Kasra Askari and Sarmin Hamidi and Mohammad Mahdi Rahimi", title = "\pkg{OPEM}: Open Source {PEM} Cell Simulation Tool", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "27", pages = "676:1--676:4", month = jul, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00676", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00676", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 July 2018", ORCID-numbers = "Sepand Haghighi / 0000-0001-9450-2375; Kasra Askari / 0000-0001-7978-9291; Sarmin Hamidi / 0000-0002-4621-0180; Mohammad Mahdi Rahimi / 0000-0002-6614-4512", } @Article{Neches:2018:PSF, author = "Russell Y. Neches and Camille Scott", title = "\pkg{SuchTree}: Fast, thread-safe computations with phylogenetic trees", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "27", pages = "678:1--678:3", month = jul, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00678", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00678", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 July 2018", ORCID-numbers = "Russell Y. Neches / 0000-0002-2055-8381; Camille Scott / 0000-0001-8822-8779", } @Article{Brancotte:2018:RTB, author = "Bryan Brancotte and Christophe Blanchet and Herv{\'e} M{\'e}nager", title = "A reusable tree-based web-visualization to browse {EDAM} ontology, and contribute to it", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "27", pages = "698:1--698:4", month = jul, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00698", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00698", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 July 2018", ORCID-numbers = "Bryan Brancotte / 0000-0001-8669-5525; Herv{\'e} M{\'e}nager / 0000-0002-7552-1009", } @Article{Versypt:2018:PBO, author = "Ashlee N. Ford Versypt and James D. Crall and Biswadip Dey", title = "\pkg{BeeNestABM}: An open-source agent-based model of spatiotemporal distribution of bumblebees in nests", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "27", pages = "718:1--718:2", month = jul, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00718", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00718", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "03 July 2018", ORCID-numbers = "Ashlee N. Ford Versypt / 0000-0001-9059-5703", } @Article{Oliver:2018:PCW, author = "Hilary J. Oliver and Matthew Shin and Oliver Sanders", title = "\pkg{Cylc}: A Workflow Engine for Cycling Systems", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "27", pages = "737:1--737:2", month = jul, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00737", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00737", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 July 2018", ORCID-numbers = "Hilary J. Oliver / 0000-0002-5715-5279; Matthew Shin / 0000-0002-5904-7511; Oliver Sanders / 0000-0001-6916-7034", } @Article{Torfi:2018:PSL, author = "Amirsina Torfi", title = "\pkg{SpeechPy} --- A Library for Speech Processing and Recognition", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "27", pages = "749:1--749:5", month = jul, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00749", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00749", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "23 July 2018", ORCID-numbers = "Amirsina Torfi / 0000-0003-2282-4361", } @Article{vanderHam:2018:PSD, author = "Ruud van der Ham", title = "\pkg{salabim}: discrete event simulation and animation in {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "27", pages = "767:1--767:2", month = jul, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00767", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00767", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "09 July 2018", ORCID-numbers = "Ruud van der Ham / 0000-0001-7696-8059", } @Article{Ramasubramani:2018:PRP, author = "Vyas Ramasubramani and Sharon C. Glotzer", title = "\pkg{rowan}: A {Python} package for working with quaternions", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "27", pages = "787:1--787:3", month = jul, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00787", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00787", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "30 July 2018", ORCID-numbers = "Vyas Ramasubramani / 0000-0001-5181-9532; Sharon C. Glotzer / 0000-0002-7197-0085", } @Article{Schlegel:2018:PHC, author = "Robert W. Schlegel and Albertus J. Smit", title = "\pkg{heatwaveR}: A central algorithm for the detection of heatwaves and cold-spells", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "27", pages = "821:1--821:2", month = jul, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00821", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00821", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "31 July 2018", ORCID-numbers = "Robert W. Schlegel / 0000-0002-0705-1287; Albertus J. Smit / 0000-0002-3799-6126", } @Article{Odell:2018:PNA, author = "Evan Odell", title = "\pkg{nomisr}: Access {Nomis UK} Labour Market Data", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "27", pages = "859:1--859:2", month = jul, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00859", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00859", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 July 2018", ORCID-numbers = "Evan Odell / 0000-0003-1845-808X", } @Article{Frost:2018:PPJ, author = "Jarvist Moore Frost", title = "\pkg{PolaronMobility.jl}: Implementation of the {Feynman} variational polaron model", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "566:1--566:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00566", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00566", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "05 August 2018", ORCID-numbers = "Jarvist Moore Frost / 0000-0003-1938-4430", } @Article{Tsyganov:2018:PRP, author = "Kirill Tsyganov and Andrew James Perry and Stuart Kenneth Archer and David Powell", title = "\pkg{RNAsik}: A Pipeline for complete and reproducible {RNA-seq} analysis that runs anywhere with speed and ease", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "583:1--583:3", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00583", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00583", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 August 2018", ORCID-numbers = "Kirill Tsyganov / 0000-0002-9195-2626; Andrew James Perry / 0000-0001-9256-6068; Stuart Kenneth Archer / 0000-0003-0450-1243; David Powell / 0000-0002-6639-6250", } @Article{Hughes:2018:PMP, author = "Momar G-O Hughes", title = "\pkg{MCycle}: A {Python} package for {$1$D} sizing and analysis of thermodynamic power cycles", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "710:1--710:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00710", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00710", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "02 August 2018", ORCID-numbers = "Momar G-O Hughes / 0000-0002-6928-2187", } @Article{Reghenzani:2018:PCM, author = "Federico Reghenzani and Giuseppe Massari and William Fornaciari", title = "\pkg{chronovise}: Measurement-Based Probabilistic Timing Analysis framework", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "711:1--711:3", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.1029/1999WR900330", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00711", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 August 2018", ORCID-numbers = "Federico Reghenzani / 0000-0002-1888-9579; Giuseppe Massari / 0000-0002-2302-4297; William Fornaciari / 0000-0001-8294-730X", } @Article{Ganose:2018:PSC, author = "Alex M. Ganose and Adam J. Jackson and David O. Scanlon", title = "\pkg{sumo}: Command-line tools for plotting and analysis of periodic ab initio calculations", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "717:1--717:3", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00717", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00717", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 August 2018", ORCID-numbers = "Alex M. Ganose / 0000-0002-4486-3321; Adam J. Jackson / 0000-0001-5272-6530; David O. Scanlon / 0000-0001-9174-8601", } @Article{Topping:2018:PPA, author = "David Topping and Paul Connolly and Jonathan Reid", title = "\pkg{PyBox}: An automated box-model generator for atmospheric chemistry and aerosol simulations", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "755:1--755:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00755", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00755", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 August 2018", ORCID-numbers = "David Topping / 0000-0001-8247-9649; Paul Connolly / 0000-0002-3294-7405; Jonathan Reid / 0000-0001-6022-1778", } @Article{Whalley:2018:PEE, author = "Lucy D. Whalley", title = "\pkg{effmass}: An effective mass package", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "797:1--797:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00797", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00797", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 August 2018", ORCID-numbers = "Lucy D. Whalley / 0000-0002-2992-9871", } @Article{Smith:2018:PUU, author = "Andrew P. Smith and Tom Russell", title = "\pkg{ukpopulation}: unified national and subnational population estimates and projections, including variants", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "803:1--803:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00803", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00803", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 August 2018", ORCID-numbers = "Andrew P. Smith / 0000-0002-9951-6642; Tom Russell / 0000-0002-0081-400X", } @Article{Goldbaum:2018:PUH, author = "Nathan J. Goldbaum and John A. ZuHone and Matthew J. Turk and Kacper Kowalik and Anna L. Rosen", title = "\pkg{unyt}: Handle, manipulate, and convert data with units in {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "809:1--809:11", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00809", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00809", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "14 August 2018", ORCID-numbers = "Nathan J. Goldbaum / 0000-0001-5557-267X; John A. ZuHone / 0000-0003-3175-2347; Matthew J. Turk / 0000-0002-5294-0198; Kacper Kowalik / 0000-0003-1709-3744; Anna L. Rosen / 0000-0003-4423-0660", } @Article{Coene:2018:PSR, author = "Jean-Philippe Coene", title = "\pkg{sigmajs}: An {R} \pkg{htmlwidget} interface to the \pkg{sigma.js} visualization library", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "814:1--814:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00814", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00814", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "10 August 2018", ORCID-numbers = "Jean-Philippe Coene / 0000-0002-6637-4107", } @Article{Moore:2018:PSS, author = "Jason K. Moore and Mont Hubbard", title = "\pkg{skijumpdesign}: A Ski Jump Design Tool for Specified Equivalent Fall Height", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "818:1--818:3", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00818", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00818", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 August 2018", ORCID-numbers = "Jason K. Moore / 0000-0002-8698-6143; Mont Hubbard / 0000-0001-8321-6576", } @Article{Sherman:2018:PBA, author = "Marcus D. Sherman and Ryan E. Mills", title = "\pkg{BAMnostic}: an {OS}-agnostic toolkit for genomic sequence analysis", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "826:1--826:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00826", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00826", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "09 August 2018", ORCID-numbers = "Marcus D. Sherman / 0000-0002-0243-4609; Ryan E. Mills / 0000-0003-3425-6998", } @Article{Taylor:2018:PPP, author = "Shawn David Taylor", title = "\pkg{pyPhenology}: A python framework for plant phenology modelling", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "827:1--827:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00827", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00827", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 August 2018", ORCID-numbers = "Shawn David Taylor / 0000-0002-6178-6903", } @Article{Waggoner:2018:PHP, author = "Philip D. Waggoner", title = "The \pkg{hhi} Package: Streamlined Calculation and Visualization of {Herfindahl--Hirschman} Index Scores", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "828:1--828:5", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00828", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00828", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "06 August 2018", ORCID-numbers = "Philip D. Waggoner / 0000-0002-7825-7573", } @Article{Ostrouchov:2018:PPA, author = "Christopher Ostrouchov and Yanwen Zhang and William J. Weber", title = "\pkg{pysrim}: Automation, Analysis, and Plotting of {SRIM} Calculations", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "829:1--829:3", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00829", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00829", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "02 August 2018", ORCID-numbers = "Christopher Ostrouchov / 0000-0002-8734-4564; Yanwen Zhang / 0000-0003-1833-3885; William J. Weber / 0000-0002-9017-7365", } @Article{Wiley:2018:PRR, author = "David Wiley", title = "\pkg{RISE}: An {R} package for {RISE} analysis", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "846:1--846:1", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00846", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00846", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 August 2018", ORCID-numbers = "David Wiley / 0000-0001-6722-4744", } @Article{Arel-Bundock:2018:PCR, author = "Vincent Arel-Bundock and Nils Enevoldsen and C. J. Yetman", title = "\pkg{countrycode}: An {R} package to convert country names and country codes", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "848:1--848:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00848", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00848", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "09 August 2018", ORCID-numbers = "Vincent Arel-Bundock / 0000-0003-2042-7063; Nils Enevoldsen / 0000-0001-7195-4117; C. J. Yetman / 0000-0001-5099-9500", } @Article{Handley:2018:PFP, author = "Will Handley", title = "\pkg{fgivenx}: A {Python} package for functional posterior plotting", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "849:1--849:4", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00849", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00849", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 August 2018", ORCID-numbers = "Will Handley / 0000-0002-5866-0445", } @Article{Murray:2018:PPP, author = "Steven G. Murray", title = "\pkg{powerbox}: A {Python} package for creating structured fields with isotropic power spectra", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "850:1--850:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00850", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00850", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "20 August 2018", ORCID-numbers = "Steven G. Murray / 0000-0003-3059-3823", } @Article{Morris:2018:PAA, author = "Brett M. Morris and Trevor Dorn-Wallenstein", title = "\pkg{aesop}: {ARC Echelle Spectroscopic Observation Pipeline}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "854:1--854:1", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00854", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00854", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 August 2018", ORCID-numbers = "Brett M. Morris / 0000-0003-2528-3409; Trevor Dorn-Wallenstein / 0000-0003-3601-3180", } @Article{Wadhwa:2018:PTR, author = "Raoul R. Wadhwa and Drew F. K. Williamson and Andrew Dhawan and Jacob G. Scott", title = "\pkg{TDAstats}: {R} pipeline for computing persistent homology in topological data analysis", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "860:1--860:3", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00860", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00860", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 August 2018", ORCID-numbers = "Raoul R. Wadhwa / 0000-0003-0503-9580; Drew F. K. Williamson / 0000-0003-1745-8846; Andrew Dhawan / 0000-0002-5027-1277; Jacob G. Scott / 0000-0003-2971-7673", } @Article{Porter:2018:PJE, author = "Michael T. Porter", title = "\pkg{js-emass}: A flexible {JavaScript} implementation of the \pkg{emass} algorithm", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "869:1--869:1", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00869", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/java2010.bib; https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00869", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "22 August 2018", ORCID-numbers = "Michael T. Porter / 0000-0002-1148-6603", } @Article{Jones:2018:PLL, author = "Andrew T. Jones and Hien D. Nguyen and Geoffrey J. McLachlan", title = "\pkg{logKDE}: log-transformed kernel density estimation", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "870:1--870:3", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00870", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00870", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "06 August 2018", ORCID-numbers = "Hien D. Nguyen / 0000-0002-9958-432X", } @Article{deBuyl:2018:PTT, author = "Pierre de Buyl", title = "\pkg{tidynamics}: A tiny package to compute the dynamics of stochastic and molecular simulations", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "877:1--877:4", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00877", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00877", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 August 2018", ORCID-numbers = "Pierre de Buyl / 0000-0002-6640-6463", } @Article{Sochat:2018:PCO, author = "Vanessa Sochat", title = "\pkg{Containershare}: {Open Source Registry} to build, test, deploy with {CircleCI}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "878:1--878:3", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00878", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00878", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 August 2018", ORCID-numbers = "Vanessa Sochat / 0000-0002-4387-3819", } @Article{Klebel:2018:PJI, author = "Thomas Klebel", title = "\pkg{jstor}: Import and Analyse Data from Scientific Texts", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "883:1--883:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00883", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00883", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "08 August 2018", ORCID-numbers = "Thomas Klebel / 0000-0002-7331-4751", } @Article{Andrews:2018:PGF, author = "Jared M. Andrews and Mohamed El-Alawi and Jacqueline E. Payton", title = "\pkg{Genotify}: Fast, lightweight gene lookup and summarization", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "885:1--885:4", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00885", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00885", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "15 August 2018", ORCID-numbers = "Jared M. Andrews / 0000-0002-0780-6248; Mohamed El-Alawi / 0000-0001-6506-8549; Jacqueline E. Payton / 0000-0001-8832-3661", } @Article{Williams:2018:CPN, author = "Benjamin Williams", title = "Combining a Probability and a Non-Probability Sample in a Capture--Recapture Setting", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "886:1--886:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00886", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00886", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "14 August 2018", ORCID-numbers = "Benjamin Williams / 0000-0001-8474-5066", } @Article{Nunez-Elizalde:2018:PCS, author = "Anwar O. Nunez-Elizalde and James S. Gao and Tianjiao Zhang and Jack L. Gallant", title = "\pkg{cottoncandy}: scientific python package for easy cloud storage", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "890:1--890:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00890", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00890", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "24 August 2018", ORCID-numbers = "Anwar O. Nunez-Elizalde / 0000-0003-1346-670X", } @Article{Sousa:2018:PBR, author = "David N. Sousa and Jo{\~a}o R. Daniel", title = "\pkg{bor}: An {R} Package for Transforming Behavioral Observation Records into Data Matrices", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "909:1--909:4", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00909", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00909", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "28 August 2018", ORCID-numbers = "David N. Sousa / 0000-0001-7277-6447; Jo{\~a}o R. Daniel / 0000-0001-6609-2014", } @Article{Dirmeier:2018:PDR, author = "Simon Dirmeier", title = "\pkg{datastructures}: An {R} package for organisation and storage of data", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "28", pages = "910:1--910:2", month = aug, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00910", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/s-plus.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00910", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "27 August 2018", ORCID-numbers = "Simon Dirmeier / 0000-0001-9795-3550", } @Article{Roubeyrie:2018:PWP, author = "Lionel Roubeyrie and S{\'e}bastien Celles", title = "\pkg{Windrose}: A {Python} \pkg{Matplotlib}, \pkg{Numpy} library to manage wind and pollution data, draw windrose", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "29", pages = "268:1--268:5", month = sep, year = "2018", CODEN = "????", DOI = "https://doi.org/10.1002/asl.680", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00268", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 September 2018", ORCID-numbers = "Lionel Roubeyrie / 0000-0001-6017-4385; S{\'e}bastien Celles / 0000-0001-9987-4338", } @Article{Fleming:2018:PAA, author = "David P. Fleming and Jake VanderPlas", title = "\pkg{approxposterior}: Approximate Posterior Distributions in {Python}", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "29", pages = "781:1--781:2", month = sep, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00781", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00781", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 September 2018", ORCID-numbers = "David P. Fleming / 0000-0001-9293-4043; Jake VanderPlas / 0000-0002-9623-3401", } @Article{Gray:2018:PQP, author = "Johnnie Gray", title = "\pkg{quimb}: A python package for quantum information and many-body calculations", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "29", pages = "819:1--819:3", month = sep, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00819", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00819", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "04 September 2018", ORCID-numbers = "Johnnie Gray / 0000-0001-9461-3024", } @Article{Pfenninger:2018:PCM, author = "Stefan Pfenninger and Bryn Pickering", title = "\pkg{Calliope}: a multi-scale energy systems modelling framework", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "29", pages = "825:1--825:2", month = sep, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00825", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00825", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "12 September 2018", ORCID-numbers = "Stefan Pfenninger / 0000-0002-8420-9498; Bryn Pickering / 0000-0003-4044-6587", } @Article{McInnes:2018:PUU, author = "Leland McInnes and John Healy and Nathaniel Saul and Lukas Gro{\ss}berger", title = "\pkg{UMAP}: Uniform Manifold Approximation and Projection", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "29", pages = "861:1--861:2", month = sep, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00861", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00861", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "02 September 2018", ORCID-numbers = "Leland McInnes / 0000-0003-2143-6834", } @Article{Goyal:2018:PGP, author = "Palash Goyal and Emilio Ferrara", title = "\pkg{GEM}: A {Python} package for graph embedding methods", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "29", pages = "876:1--876:2", month = sep, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00876", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00876", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "01 September 2018", ORCID-numbers = "Palash Goyal / 0000-0003-2455-2160; Emilio Ferrara / 0000-0002-1942-2831", } @Article{Holmgren:2018:PPP, author = "William F. Holmgren and Clifford W. Hansen and Mark A. Mikofski", title = "\pkg{pvlib python}: a python package for modeling solar energy systems", journal = j-J-OPEN-SOURCE-SOFT, volume = "3", number = "29", pages = "884:1--884:3", month = sep, year = "2018", CODEN = "????", DOI = "https://doi.org/10.21105/joss.00884", ISSN = "2475-9066", ISSN-L = "2475-9066", bibdate = "Thu Sep 13 08:09:35 MDT 2018", bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib; https://www.math.utah.edu/pub/tex/bib/python.bib", URL = "http://joss.theoj.org/papers/10.21105/joss.00884", acknowledgement = ack-nhfb, fjournal = "Journal of Open Source Software", journal-URL = "http://joss.theoj.org/; https://github.com/openjournals/joss-papers/", onlinedate = "07 September 2018", ORCID-numbers = "William F. Holmgren / 0000-0001-6218-9767; Clifford W. Hansen / 0000-0002-8620-5378; Mark A. Mikofski / 0000-0001-8001-8582", }